Pairwise Alignments

Query, 324 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 477 a.a., surface antigen gene from Variovorax sp. SCN45

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 53/185 (28%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 51  GNRPRGITISPDGKELYVCASDDDTVRVFDPE------TYKELHTLPSGPDPELFALDPS 104
           GN P GI + P G+  YV + DD TV  F+ +      T   + T+ +G  P   A+DPS
Sbjct: 275 GNLPYGIALDPSGRFAYVVSIDDATVSAFNIDATSGALTPMAIPTVATGVAPHDIAVDPS 334

Query: 105 GNPLYIANEDDNLVTVVDVK------TRQVLAEVPVGVEPEGVAVSPDAK--TIINTSET 156
           G   Y+ N+ D  VT   +       T    A    G  P  + V P  +   + N    
Sbjct: 335 GRFAYVMNQADQNVTAYSIDPVSGALTPLAAARPATGGSPASITVDPKGRFAYVANLDSH 394

Query: 157 TNMAHFIDASTYKI----VHNVLVDQRPRYAEFTADGKKLYVSAEIGGTVSVIDVSAAEP 212
              A+ +DAST  +       +    RP      A G+  YV+    G VSV DV A   
Sbjct: 395 NVSAYLLDASTGALTPAPTPTISTGSRPVSVTIEASGRFAYVADGTDGKVSVYDVDAVSG 454

Query: 213 KITKK 217
            +  +
Sbjct: 455 MLNSR 459



 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 32/261 (12%)

Query: 24  VFVSNERGNNITV--LDSESWEVIAT-FPA---GNRPRGITISPDGKELYVCASDDDTVR 77
           V+VS+  GN ++V  +D  +  + AT  PA   G    G+ + P G+  Y        VR
Sbjct: 194 VYVSSASGNGVSVYAVDRTTGSLQATGAPAVALGGTSAGMAVDPTGRFAYFVNLLGGGVR 253

Query: 78  VFDPETYK------ELHTLPSGPDPELFALDPSGNPLYIANEDDNLVTVVDVK------T 125
            FD + +        +  + +G  P   ALDPSG   Y+ + DD  V+  ++       T
Sbjct: 254 AFDIDAHTGALSPMAVPFVETGNLPYGIALDPSGRFAYVVSIDDATVSAFNIDATSGALT 313

Query: 126 RQVLAEVPVGVEPEGVAVSPDAK--TIINTSETTNMAHFIDASTYKIVHNVLVDQRPRY- 182
              +  V  GV P  +AV P  +   ++N ++    A+ ID  +  +    L   RP   
Sbjct: 314 PMAIPTVATGVAPHDIAVDPSGRFAYVMNQADQNVTAYSIDPVSGAL--TPLAAARPATG 371

Query: 183 ---AEFTAD--GKKLYVSAEIGGTVSVIDVSAAEPKITKKITFEVPGVLPEWLQPVGVKA 237
              A  T D  G+  YV+      VS   + A+   +T   T      +    +PV V  
Sbjct: 372 GSPASITVDPKGRFAYVANLDSHNVSAYLLDASTGALTPAPT----PTISTGSRPVSVTI 427

Query: 238 TKDGSRIFVALGPANRVAVID 258
              G   +VA G   +V+V D
Sbjct: 428 EASGRFAYVADGTDGKVSVYD 448



 Score = 38.1 bits (87), Expect = 4e-07
 Identities = 71/351 (20%), Positives = 122/351 (34%), Gaps = 39/351 (11%)

Query: 5   ALAIVSAVLLSAGSAEANKVFVSNERGNNITVLDSESWEV-IATFPAGNRPRGITISPDG 63
           A A VS V +      +   +VSN    +   +D+ S  +  AT  +      +T+ P G
Sbjct: 132 AAAAVSDVQVVCAEPPSRFAYVSNGNSVSAYAIDATSGALGPATTLSVPSSYALTVDPSG 191

Query: 64  KELYVCASDDDTVRVFDPETYKELHTLPSGPDPEL------FALDPSGNPLYIANEDDNL 117
           + +YV ++  + V V+  +           P   L       A+DP+G   Y  N     
Sbjct: 192 RFVYVSSASGNGVSVYAVDRTTGSLQATGAPAVALGGTSAGMAVDPTGRFAYFVNLLGGG 251

Query: 118 VTVVDVKTR------QVLAEVPVGVEPEGVAVSPDAK--TIINTSETTNMAHFIDAS--- 166
           V   D+           +  V  G  P G+A+ P  +   +++  + T  A  IDA+   
Sbjct: 252 VRAFDIDAHTGALSPMAVPFVETGNLPYGIALDPSGRFAYVVSIDDATVSAFNIDATSGA 311

Query: 167 -TYKIVHNVLVDQRPRYAEFTADGKKLYVSAEIGGTVSVIDVSAAEPKIT-----KKITF 220
            T   +  V     P        G+  YV  +    V+   +      +T     +  T 
Sbjct: 312 LTPMAIPTVATGVAPHDIAVDPSGRFAYVMNQADQNVTAYSIDPVSGALTPLAAARPATG 371

Query: 221 EVPGVLPEWLQPVG---VKATKDGSRIFVALGPANRVAVIDGKTDEVLDYFLVGQRVWQM 277
             P  +   + P G     A  D   +   L  A+  A+    T  +      G R   +
Sbjct: 372 GSPASIT--VDPKGRFAYVANLDSHNVSAYLLDASTGALTPAPTPTI----STGSRPVSV 425

Query: 278 AFTPGEEFLITTNGNSNDVSIIDVKA------EKVIRSVQVGEQPWGVVVA 322
                  F    +G    VS+ DV A       +   +V  G+ P  +V++
Sbjct: 426 TIEASGRFAYVADGTDGKVSVYDVDAVSGMLNSRPALTVDAGQSPNKIVLS 476