Pairwise Alignments

Query, 747 a.a., sensor histidine kinase from Sinorhizobium meliloti 1021

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  135 bits (339), Expect = 2e-35
 Identities = 143/546 (26%), Positives = 242/546 (44%), Gaps = 82/546 (15%)

Query: 213 DQQSHLLQAAFDHMSLGICTFSSGGELLVRNERFGELLGVPLSLLKKGSPFQRIVEHVER 272
           +++S L+  + D    GIC  +  G +   N     +LG  L  +  G P   +  H   
Sbjct: 472 EERSRLILGSVDE---GICGLAQDGTMSFVNPAGARMLGYGLDEIV-GKPLHALAHHTYP 527

Query: 273 HEILDREGRRSRVAGWFKAVRRGEA---VQERFRRRDGMSLDIRIHSLPD------DGFI 323
               D           F   + G+    V E   R+DG S  +   + P        G +
Sbjct: 528 ----DGTPFPRECCSMFLTSQDGQPRTEVDEVLWRKDGTSFPVEYSTTPVLKDGTVVGTV 583

Query: 324 VSIMDVTAETQASALLEQRVQERTAELTEANRLLQIHADEQTKIEAALRHAKEAAEAAHT 383
           V+  D+T   +A ALL Q                                A + AEAA  
Sbjct: 584 VTFRDITERKRADALLHQ--------------------------------ALDRAEAASQ 611

Query: 384 SKTRFLAAASHDLLQPINA--AKLYLSMLTDKVGQPGTEEVVRRLKRSFTSIESLLQALL 441
           +K  FLA  SH++  P+NA     +L++ T+    P   + VR++++S   +  ++  +L
Sbjct: 612 AKADFLANMSHEIRTPMNAIIGMSHLALKTEL--NPRQRDYVRKIQQSGQHLLGIINDIL 669

Query: 442 DISRLDSSGAEFNVTSFNLGNLLQGVAEDLAPLATERGIDLRI-----VPSSRWVSSDQR 496
           D S++++       T+ +L  +L  VA  ++     +G++L       VP+   +  D  
Sbjct: 670 DFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPND--MVGDPL 727

Query: 497 YLMRCVQNLVVNAIQYTERGRVLVGCRLT---GDAVRI--EVWDTGVGISEEDRTRIFKE 551
            L + + N   NA+++TE G ++V  RL    G+AVR+  EV DTG+G+S E   R+F+ 
Sbjct: 728 RLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQS 787

Query: 552 FTRA--SGAAKGPGMGLGLSIVERACRHLDHPIRLASQPGRGSVFSIEVPL--AAPGHAS 607
           F +A  S   K  G GLGL+I  +    +D  + + SQPGRGS F     L    P  A 
Sbjct: 788 FQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKGRPRRAL 847

Query: 608 VSEDPRMEPMLDGSLDLIVMIVENDADELHAMTQVLESWGASVLAADSTADAAALMQEIG 667
           V      +P L G     +++V+++ +    +  +L S    V A +S A A A ++E+ 
Sbjct: 848 VP-----KPDLRGR---HMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVA 899

Query: 668 TAP--DILLVDYQLDDEDNGIETIHTLRALAGAEIP-AIIISANRQRQFLQLCNEMSFA- 723
            A   +++ +D+Q+   D GIET   +  L     P  I+++A+ + + ++         
Sbjct: 900 GAKPFEVVFLDWQMPGMD-GIETARAILGLGLTSPPHMIMVTAHGREEVMKAAESAGIED 958

Query: 724 VLTKPV 729
           VL KPV
Sbjct: 959 VLIKPV 964



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 624  LIVMIVENDADELHAMTQVLESWGASVLAADSTADAAALMQEIGTAP-DILLVDYQLDDE 682
            L V++ E++       T++L   G  V  A++   A  ++     AP D++L+D Q+   
Sbjct: 1005 LRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVM---AAPYDMVLMDMQMPVM 1061

Query: 683  DNGIETIHTLRALAGAEIPAIIISANRQRQFLQLCNEMSF-AVLTKPVQLVRLRA-LIDW 740
            D G+     +R L   ++P I ++AN  +     C        LTKP+    L A L+ W
Sbjct: 1062 D-GVAATREIRRLGFGDLPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDELFACLLKW 1120

Query: 741  KTRARVA 747
            +  A  A
Sbjct: 1121 RGVAPTA 1127