Pairwise Alignments

Query, 501 a.a., ABC transporter oligopeptide-binding protein from Sinorhizobium meliloti 1021

Subject, 497 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  145 bits (365), Expect = 4e-39
 Identities = 129/398 (32%), Positives = 192/398 (48%), Gaps = 29/398 (7%)

Query: 1   MQMKRTLI---MGALMLGSALAPAFAASGP--VKIVLPEEADLLEPCMATRSNIGRIIMQ 55
           M  +RTL+   M A + G  L  A A +G   + I +P E   L+P     S I  I   
Sbjct: 1   MLKRRTLMTSAMAAAIPGVFLPQARAQAGKNTLTIGMPLEPPGLDPTTGAASAIAEITQY 60

Query: 56  NVSETLTELDVREGKGLMPRLAESWEQKED-GSWRFNLRTGVKFSDGTDFNAKDVKYSFD 114
           N+ ETLT+  V     + P LAESW    D  ++ F LR GV+F +   FNA  VK+SFD
Sbjct: 61  NIFETLTK--VNADGSVTPMLAESWSSSPDMKTFVFKLRKGVRFENDQPFNAHTVKFSFD 118

Query: 115 RVMSDKNACESRRYFGGMNIKIDVVDDTTVDFTVDPVQPILPLLL--SLLTIVPEETPME 172
           R    K+  + +R+F    I   V+D+ TV        P LP +L  S   IV  ++   
Sbjct: 119 RAGGAKSTNKDKRFFS--EIGTVVLDEYTVGVNSTLPNPDLPFMLGQSTACIVEPKSADT 176

Query: 173 FVREPVGTGPYKLTDWTPGQQIVLSARDDYWGEK-PEVTEATYLFRADPAVRAAMVQTGE 231
               PVGTGPYKL+ W  G    L     Y  +   +V +  + F +D A + A +   +
Sbjct: 177 NATAPVGTGPYKLSAWQRGASCTLVKSPSYRDQNLAKVPKFVFRFMSDTAAQTAALMAND 236

Query: 232 ADLSP-----SISQTEATNPATDFSYLDSET---VYLRIDHNIEPLNDVRIRRALNLAID 283
            D+ P     S++Q +  NP   F  ++  T   V L I++  +PL+DVR+RRA+  AID
Sbjct: 237 IDIFPRAGTRSVAQFKG-NPR--FQVIEVGTRGKVILTINNRKKPLDDVRVRRAILAAID 293

Query: 284 REAFLGTLVPDSAVLATAIVPPPTLGWNPDVKVFPYDPEQAKKLIEEAKADGVKVDTPIT 343
           R A +            +       G+     + P+D E+AKKL+ EA   GVK  TP+ 
Sbjct: 294 RNAIIQGAADGFGKPIGSHYAMGAPGFVDTTAMNPFDIEKAKKLLAEA---GVK--TPLE 348

Query: 344 IIARTANFPNVTEIMEAIQAQLQEVGLKVELKFVEVAE 381
           +  +        +  E I AQL ++G+ V+++ VE A+
Sbjct: 349 LRLQLPPPSYARQGGEMIAAQLAQIGINVKIQNVEWAQ 386