Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  175 bits (443), Expect = 1e-48
 Identities = 106/318 (33%), Positives = 174/318 (54%), Gaps = 17/318 (5%)

Query: 3   RFIRQRALASLISLIGLIVMVFFLSRMTGDPAALFLPVE---ASAEMKEQFRELHGLNDP 59
           R + + A  ++ ++IG+I++ F L ++    AA  +  E   A+AE   Q R   GL+ P
Sbjct: 8   RTLVRTAWQAVPTVIGVILLNFILMQLIPGDAADVVAAESGSATAESMAQLRTHFGLDLP 67

Query: 60  ILVQFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSLG 119
           ++ Q   Y+ ++    LG S R   P + ++      TL L V  +       I  G++ 
Sbjct: 68  VIQQLFAYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAGTVM 127

Query: 120 AFRSGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSGTGSVV--------- 170
           A R G + DR  S+++L+  S P FWL ++AIV+FS++   LPT G+ S+          
Sbjct: 128 ATRVGRWQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTGWTHV 187

Query: 171 -----HWILPIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHALRN 225
                H +LP   +      I  ++ R +M+      +V+TA AKG+    +   H LRN
Sbjct: 188 VDVARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRHILRN 247

Query: 226 AMLPVITVVGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIAIF 285
           A++PV TV G    +LL GAVVVET+F +PG+G+L  DS+  RD+ V+L  +L++++ + 
Sbjct: 248 ALIPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSSLLVI 307

Query: 286 LMNVLIDLAYALLDPRIR 303
           + N+L+DL +A LDPRI+
Sbjct: 308 VANMLVDLLHAWLDPRIQ 325