Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  188 bits (478), Expect = 1e-52
 Identities = 112/333 (33%), Positives = 174/333 (52%), Gaps = 30/333 (9%)

Query: 1   MLRFIRQRALASLISLIGLIVMVFFLSRMT-GDPAALFLPVEASAEMKE-QFRELHGLND 58
           M RFI  R    + + IG+ ++ FFL R+  GDP             +  + R  +G + 
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDK 60

Query: 59  PILVQFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSL 118
           P++VQ+  Y+G V+ GDLG+S+      +   L  F  T+ LAV  +       +  G L
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGIL 120

Query: 119 GAFRSGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSG-----------TG 167
            A R    FD      SL G S+P FW  ++ I+ FS+     P SG           TG
Sbjct: 121 AAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPETG 180

Query: 168 SVV-----------------HWILPIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAK 210
            ++                 H ILP  VL   P  +I ++ R +M+  L   Y++TARAK
Sbjct: 181 FLLIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK 240

Query: 211 GVKSGPIIFIHALRNAMLPVITVVGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDF 270
           G+    ++ +HALRNA++PV+TV+G Q   L  GA++ ETIF +PGVGK +I++I +RD+
Sbjct: 241 GLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDY 300

Query: 271 NVVLAAILVTAIAIFLMNVLIDLAYALLDPRIR 303
            V+   +L+    + L+N+L+D+AY +++PRIR
Sbjct: 301 PVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIR 333