Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 313 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  194 bits (493), Expect = 2e-54
 Identities = 115/313 (36%), Positives = 180/313 (57%), Gaps = 9/313 (2%)

Query: 1   MLRFIRQRALASLISLIGLIVMVFFLSRMT-GDPAALFLPVEASAEMKEQFRELHGLNDP 59
           ML F+ +R LA+L  L+ + V +F + R+T GDPAA+     A+ E  ++ R   GL  P
Sbjct: 1   MLTFLGKRLLATLPVLLVVAVAIFMIVRLTPGDPAAVIGGNSATNEDLDRIRVQLGLTRP 60

Query: 60  ILVQFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSLG 119
           +  QFA +   V+ GDLG S    +P  +++ +    TL LA  T+ L    A+ +G+L 
Sbjct: 61  LWEQFAIWCNGVLHGDLGFSFFLNKPVTELIGQRMEPTLSLAGGTLLLAVAIALPLGTLA 120

Query: 120 AFRSGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSG-------TGSVVHW 172
           A+R GG+ D+     S+ G SVP F +  V I + ++     P  G        G  +H 
Sbjct: 121 AWRMGGWLDKAVMAFSVAGFSVPVFVVGYVLIYLLAMKLQWFPVQGYRRIADGVGPWLHQ 180

Query: 173 -ILPIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVI 231
            +LP   L +    ++ +V R ++  AL+  +++TARAKG+    ++  HALRNA +PV+
Sbjct: 181 LVLPCLTLAITYVALLSRVTRAAVSEALTEDFIRTARAKGITELEVLKHHALRNAAVPVV 240

Query: 232 TVVGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIAIFLMNVLI 291
           TV+G  AA LL G VV ET+F  PG+G+L +D++L RDF V+   +L  A+    +N+L+
Sbjct: 241 TVIGVSAALLLGGVVVTETVFAIPGLGQLTVDAVLNRDFPVLQGVVLFFAVVYVAVNLLV 300

Query: 292 DLAYALLDPRIRH 304
           DL+Y  +DPRIR+
Sbjct: 301 DLSYLFIDPRIRY 313