Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  183 bits (465), Expect = 4e-51
 Identities = 107/310 (34%), Positives = 179/310 (57%), Gaps = 10/310 (3%)

Query: 4   FIRQRALASLISLIGLIVMVFFLSRMT-GDPAALFLPVEASAEMKEQFRELHGLNDPILV 62
           +I +R L++L  +  + V+VF L  ++ GDPAAL     A+ E  E+ R   GLN P+  
Sbjct: 3   YIVRRFLSTLPVMAVVAVVVFLLIHLSPGDPAALIAGDLATTEDIEKLRATLGLNLPLWQ 62

Query: 63  QFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSLGAFR 122
           QF  ++G + TGDLG S+    P   ++ +    T+ +A +TM +    ++ +G+L A+R
Sbjct: 63  QFTLWLGKLFTGDLGTSIFTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPLGTLAAYR 122

Query: 123 SGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSG----TGSVVHW----IL 174
           +G + DRL  + +++  SVP F +  + +  F+I     P  G          W    +L
Sbjct: 123 AGSWIDRLVMLFAVLAFSVPVFLVGYLLVYSFAIQLPWFPVQGYVRLADGAGEWLRSLVL 182

Query: 175 PIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVV 234
           P   L +    ++ ++ R +++  L   Y++TARAKG+   P++  HALRNA +P+ T +
Sbjct: 183 PCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLGVLPVLG-HALRNAAIPIATTI 241

Query: 235 GDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIAIFLMNVLIDLA 294
           G   A L+ G VV ET+F  PGVG+L+IDS+ + D+ V+ + +L++A    L+N+LIDL+
Sbjct: 242 GAGIALLIGGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLLLSAGVYVLINLLIDLS 301

Query: 295 YALLDPRIRH 304
           Y L DPRI++
Sbjct: 302 YRLFDPRIQY 311