Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 308 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

 Score =  182 bits (461), Expect = 1e-50
 Identities = 101/303 (33%), Positives = 162/303 (53%)

Query: 1   MLRFIRQRALASLISLIGLIVMVFFLSRMTGDPAALFLPVEASAEMKEQFRELHGLNDPI 60
           M+ FI  R + ++I ++  +  VF + R+ GDPA   L   A+ E    FR   GL+  I
Sbjct: 1   MISFILARLVRAIIVMMLTVTFVFIILRLGGDPARAMLGENATPEALAAFRTAWGLDRSI 60

Query: 61  LVQFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSLGA 120
             QF  Y+   + GD G S    R    V+ E    TL L +    L     I  G + A
Sbjct: 61  PEQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGIIAA 120

Query: 121 FRSGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSGTGSVVHWILPIAVLF 180
            R     D+     +++G SVP+F L +  I +F++ F +LP+SG+ +  H ILP+A   
Sbjct: 121 VRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAILPVATFG 180

Query: 181 VRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVVGDQAAS 240
           +     I +  R +++  L   Y+  ARA G+    ++  HAL NA +P++T++G  AA 
Sbjct: 181 LVNAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHALPNAAIPMVTMLGFVAAG 240

Query: 241 LLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIAIFLMNVLIDLAYALLDP 300
           LL G+ +VET+F +PG+G   + +I   D NVV A IL+    +  +N+++D+ YA+L+P
Sbjct: 241 LLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFMVTINLIVDVLYAVLNP 300

Query: 301 RIR 303
           +IR
Sbjct: 301 KIR 303