Pairwise Alignments

Query, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  475 bits (1223), Expect = e-138
 Identities = 264/563 (46%), Positives = 368/563 (65%), Gaps = 44/563 (7%)

Query: 2   AEHLLEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDM 61
           A  LL V  LSVEF    G    V  IS+ ++ G T+A++GESGSGKSV+S + M L DM
Sbjct: 6   ANALLSVEGLSVEF----GDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADM 61

Query: 62  PPGRISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTT 121
                 +G+IL +G+DLL    +E R + G+ +AMIFQ+P++ LNPV+++G QI E +  
Sbjct: 62  MGATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVL 121

Query: 122 HGLAG-SKAREEALRLLRRVGIPEPERAMRKYPHEFSGGQRQRVMIAMALALRPDLLIAD 180
           H   G + A E+A +LL  V +P+    + +YPH+ SGG RQRVMIAMALA RP LLIAD
Sbjct: 122 HEKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIAD 181

Query: 181 EPTTALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGTV 240
           EPTTALDVT+QA++L ++++LQ++ GM ++ ITHD+GVV+E+AD VVVM KG  VE G V
Sbjct: 182 EPTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPV 241

Query: 241 REIYKNPQHPYTQKLIAAAPGKGAMH----------------EPGARAE----------- 273
           ++I+ NPQHPYT+ L++A P  G+M                 +P    E           
Sbjct: 242 KDIFANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQ 301

Query: 274 -PLLSVRDV-------RKTYGS----FEALKGISFDLMPGETMAVVGESGSGKSTLARAL 321
            PLLSV+D+       +  +G       A++ +SFD+  GET+A+VGESGSGKST+ R +
Sbjct: 302 KPLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTI 361

Query: 322 LRLDEPDSGTALWKGRDLFALSPAELYKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVI 381
            +L    SG   + GR    +S AE +++R+++Q +FQDP  SL+PR TV   I+E    
Sbjct: 362 QQLQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINT 421

Query: 382 HPDILPKAKWRERVAELLVQVGLSAEHMSRYPHQFSGGQRQRIAIARALALEPQLIICDE 441
           H  I  +   R RV ELL +VGLS+EH +RYPH+FSGGQRQR+ IARALA +P+LII DE
Sbjct: 422 HGLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADE 481

Query: 442 AVSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVR 501
           A+SALDVS+QAQ+I L   L+ E G+A++FI+HD+ VV   +  V V+  G+++ELG+ +
Sbjct: 482 ALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQ 541

Query: 502 EVFDTPRQAYTRALLAASLSPDP 524
           +VF+TP   YTR LL+A    DP
Sbjct: 542 QVFETPTHDYTRRLLSAVPVADP 564



 Score =  196 bits (498), Expect = 2e-54
 Identities = 111/257 (43%), Positives = 164/257 (63%), Gaps = 9/257 (3%)

Query: 270 ARAEPLLSVRDVRKTYGSFEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDEP-- 327
           A A  LLSV  +   +G    +  ISF + PG T+AVVGESGSGKS  + + +RL +   
Sbjct: 4   ANANALLSVEGLSVEFGDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMG 63

Query: 328 ---DSGTALWKGRDLFALSPAELYKLR-RDLQMVFQDPTQSLNPRMTVYQLISEAWVIHP 383
               +G  L++G+DL   S  E+  +R +++ M+FQ+P  SLNP  T+   I E  V+H 
Sbjct: 64  ATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLH- 122

Query: 384 DILPKAKWRERVAELLVQVGL--SAEHMSRYPHQFSGGQRQRIAIARALALEPQLIICDE 441
           + L K    E+  +LL  V L  +AE + RYPHQ SGG RQR+ IA ALA  P+L+I DE
Sbjct: 123 EKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADE 182

Query: 442 AVSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVR 501
             +ALDV++QAQ++ ++  L++++G+  +FI HD+ VV + AD V+VM +G+ VE G V+
Sbjct: 183 PTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVK 242

Query: 502 EVFDTPRQAYTRALLAA 518
           ++F  P+  YTRALL+A
Sbjct: 243 DIFANPQHPYTRALLSA 259