Pairwise Alignments

Query, 508 a.a., sugar ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 510 a.a., D-ribose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  279 bits (714), Expect = 1e-79
 Identities = 174/489 (35%), Positives = 279/489 (57%), Gaps = 10/489 (2%)

Query: 1   MAGKQLLLMDGIHKRFGPLIVSAGVTLDVEENEIHALLGENGAGKTVLMSILCGVLSPNE 60
           M+ + LL M GI K F  L V   V L V   EIHAL+GENGAGK+ LM IL G    + 
Sbjct: 1   MSLEPLLEMQGISKTFNGLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADP 60

Query: 61  G-QIVFKGRPLKLGSPREAIKHRIGMVHQHFMLVPNLTVAENYVLGQGSPFSMIRDMRAV 119
           G +I   G+ +    P  A    I +++Q   L PNL+VAEN  LG+        D + +
Sbjct: 61  GGEIRIAGQLIPTFDPATAKALGIAVIYQELSLCPNLSVAENIYLGRELRRGWTIDRKGM 120

Query: 120 HARILELSDRYGLDVAPDALVSSLSVGERQRVEILKVLYHGIELLILDEPTAVLTPQETD 179
            A  +E+  R G +  P   VSSLS+ ERQ VEI + L+   ++L++DEPT  L+ +ETD
Sbjct: 121 EAGCIEVLQRLGAEFTPATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETD 180

Query: 180 RLLHLLRQLVADGKTVIFISHKLDEVMRVSDRVSVMRDAKVVRTVKTSETTARELARMMV 239
           RL  L++QL + G  +I+ISH++ E+  +SDRVSV+RD   +  +     +A  L +MMV
Sbjct: 181 RLFALIKQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMV 240

Query: 240 GRDVLMYLPR--APLEPGRVVLSVEHLSCDGEAGLPALRDVSFEVRANEIVGIAGVSGNG 297
           GRD+  +  +  A   PG VV+ V  ++ DG+     +R  SF++ A E++GIAG+ G G
Sbjct: 241 GRDLSGFYKKEHAAYNPGNVVMRVRDMA-DGK----RVRHCSFDLHAGEVLGIAGLVGAG 295

Query: 298 QSELALALTGLLPVASGSVTLDGTQLAGL-SSYEINQLPMAHIPEDRHRMGIVLPLPLTE 356
           ++ELA  +    P  SG++ + G  +  L +  +  +  + ++ EDR   G+ L + + +
Sbjct: 296 RTELARLIFAADPRTSGTLEVVGKAVTPLRTPADAIRAGVVYLTEDRKAQGLFLDMSVAD 355

Query: 357 NVILQRFDKPPFSSRGLLDLNEITRQTRDLMRRFKVKASGPGDRIRNLSGGNQQKLVVGR 416
           N+ +     P   + G+LD +   +++ D ++   ++ +        LSGGNQQK+++ R
Sbjct: 356 NINVCAC-VPDAHAGGVLDRDHALQRSNDAIKSLSIRVASGKVNAGALSGGNQQKVLLAR 414

Query: 417 ELDRRFDFLLINQLTRGIDIGATELVMHKILEQRSAGKAILLISTELEELFTLSDRILVM 476
            L+ +   L++++ TRG+DIG+   +   I +   AG  I++IS+EL E+    DR+L+M
Sbjct: 415 LLEVKPHVLILDEPTRGVDIGSKSEIYRIINQLAQAGIGIVVISSELPEIIGTCDRVLIM 474

Query: 477 YEGRLVGEI 485
            EG+LV E+
Sbjct: 475 REGQLVAEV 483



 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 9/233 (3%)

Query: 271 GLPALRDVSFEVRANEIVGIAGVSGNGQSELALALTGLLPV-ASGSVTLDGTQLAGLSSY 329
           GL  L+ V  +V   EI  + G +G G+S L   L+G       G + + G  +      
Sbjct: 18  GLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIRIAGQLIPTFDPA 77

Query: 330 EINQLPMAHIPEDRHRMGIVLPLPLTENVILQRFDKPPFSSRGLLDLNEITRQTRDLMRR 389
               L +A I ++   + +   L + EN+ L R  +  ++    +D   +     ++++R
Sbjct: 78  TAKALGIAVIYQE---LSLCPNLSVAENIYLGRELRRGWT----IDRKGMEAGCIEVLQR 130

Query: 390 FKVKASGPGDRIRNLSGGNQQKLVVGRELDRRFDFLLINQLTRGIDIGATELVMHKILEQ 449
              + + P  R+ +LS   +Q + + R L      L++++ T  +    T+ +   I + 
Sbjct: 131 LGAEFT-PATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRLFALIKQL 189

Query: 450 RSAGKAILLISTELEELFTLSDRILVMYEGRLVGEIPPDRSRLEEIGLLMAGK 502
           RS G AI+ IS  + E++ LSDR+ V+ +G  +GE+  D    E +  +M G+
Sbjct: 190 RSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMVGR 242