Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  197 bits (500), Expect = 4e-55
 Identities = 118/335 (35%), Positives = 181/335 (54%), Gaps = 30/335 (8%)

Query: 1   MFAFILRRAGQSLIAVIGLLVLVFFLSRLT-GDPAYLYLPLDSSEAQRQAFS-ETHGFND 58
           MF+FI RR G  +    G+ +L F L R+  GDP  + +     + +  A + E  G N 
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PLVVQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSL 118
           PL  Q+  Y+  LA+ D G++L             FP TL+L++ A++ +    ++ G +
Sbjct: 61  PLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVI 120

Query: 119 AAARPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSG-----------TG 167
           AA +  SLFD      SLAG S P FW  ++ I+ FSV LG  P SG           TG
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTG 180

Query: 168 TAL-----------------HWIMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAK 210
             L                 H I+P  VL   P  ++ ++ R +M+  L   Y++TA+AK
Sbjct: 181 FMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAK 240

Query: 211 GVNRSRIVFRHALRNSLLPVITVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDF 270
           G++ +R+VF H LRN+L+PV+TV G    +L+ GAV+ ETIF WPGIGK +I+AI  RD+
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 271 ALIQATVLVTAIAIFVLNIAIDLVYARLDPRIRFE 305
            ++Q  +L+ A  + ++N  +D++Y   +PRIR +
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335