Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  179 bits (453), Expect = 1e-49
 Identities = 104/316 (32%), Positives = 174/316 (55%), Gaps = 17/316 (5%)

Query: 5   ILRRAGQSLIAVIGLLVLVFFLSRLTGDPAYLYLPLDSSEAQRQAFSE--TH-GFNDPLV 61
           ++R A Q++  VIG+++L F L +L    A   +  +S  A  ++ ++  TH G + P++
Sbjct: 10  LVRTAWQAVPTVIGVILLNFILMQLIPGDAADVVAAESGSATAESMAQLRTHFGLDLPVI 69

Query: 62  VQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSLAAA 121
            Q   YL +LA F  G +   N P + +       TL L V A+  +L   +  G++ A 
Sbjct: 70  QQLFAYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAGTVMAT 129

Query: 122 RPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSGTGT------------- 168
           R     D+  S  +L   S P FW+ ++AI++FSV LG LPT G+ +             
Sbjct: 130 RVGRWQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTGWTHVVD 189

Query: 169 -ALHWIMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNRSRIVFRHALRNSL 227
            A H ++P   +      +  ++ R  M+      +V+TA AKG++   +  RH LRN+L
Sbjct: 190 VARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRHILRNAL 249

Query: 228 LPVITVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQATVLVTAIAIFVL 287
           +PV TVAG    +L+ GAVVVET+F WPG+G+L  D++  RD+ ++   +L++++ + V 
Sbjct: 250 IPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSSLLVIVA 309

Query: 288 NIAIDLVYARLDPRIR 303
           N+ +DL++A LDPRI+
Sbjct: 310 NMLVDLLHAWLDPRIQ 325