Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  205 bits (522), Expect = 1e-57
 Identities = 111/312 (35%), Positives = 184/312 (58%), Gaps = 9/312 (2%)

Query: 1   MFAFILRRAGQSLIAVIGLLVLVFFLSRL-TGDPAYLYLPLDSSEAQRQAFSETHGFNDP 59
           +F +I  RA   L+ +  + VLVF L+R  +GDP  + L   ++ A      + +G + P
Sbjct: 5   LFRYIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKP 64

Query: 60  LVVQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSLA 119
           L VQFG +L ++ + + G ++   RP  +   E    T  LA++A+ ++    V  G ++
Sbjct: 65  LPVQFGYWLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGIVS 124

Query: 120 AARPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSGTGTA-------LH- 171
           A     + D++ +  ++ GAS P FW+ IV I +F+V  G  P SG G         LH 
Sbjct: 125 AVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAERLHS 184

Query: 172 WIMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNRSRIVFRHALRNSLLPVI 231
            ++P  VL L    L+++  R +M+  L   YV+TAR+KG++ S +V +HALRN+L+P++
Sbjct: 185 LVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNALVPIV 244

Query: 232 TVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQATVLVTAIAIFVLNIAI 291
           TV G   A ++ GAV+ ET+FG PG+G L++ A++RRD+ +IQ  +LV A    ++N +I
Sbjct: 245 TVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSI 304

Query: 292 DLVYARLDPRIR 303
           DL+YA +DPR++
Sbjct: 305 DLLYAVVDPRVK 316