Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  196 bits (497), Expect = 8e-55
 Identities = 108/319 (33%), Positives = 174/319 (54%), Gaps = 16/319 (5%)

Query: 1   MFAFILRRAGQSLIAVIGLLVLVFFLSRLTGDPAYLYLPLDSSEAQRQAFSETHGFNDPL 60
           M AF+LRR  Q++I +I +  + F L +  GDP    L  D+   Q +      G + P 
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYVGDPVVFLLGQDAKPDQIRELRAALGLDQPF 60

Query: 61  VVQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSLAA 120
            VQF  +LV+ A+ +FG +L +      +  E FP TL+LA++A VL+L   + +G   A
Sbjct: 61  FVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVYTA 120

Query: 121 ARPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSGTGTAL---------- 170
            R  +   +   T SL G S P F + I+ ILVF+V LG  P+ G G  +          
Sbjct: 121 LRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWTSGLF 180

Query: 171 ------HWIMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNRSRIVFRHALR 224
                 H ++P   L +    L++++VR  M+  L + Y+K ARA+G++   I F HAL+
Sbjct: 181 SVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHALK 240

Query: 225 NSLLPVITVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQATVLVTAIAI 284
           N+L+PV+T+ G     L+  A++ E++F WPG+G L I A+   D  ++ A + + A+  
Sbjct: 241 NTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALIF 300

Query: 285 FVLNIAIDLVYARLDPRIR 303
            V+N+ +DL+Y  +DPR+R
Sbjct: 301 VVINLVVDLLYFVVDPRLR 319