Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 314 a.a., nickel ABC transporter permease subunit NikB from Escherichia coli ECRC62

 Score =  187 bits (475), Expect = 3e-52
 Identities = 107/307 (34%), Positives = 163/307 (53%), Gaps = 4/307 (1%)

Query: 1   MFAFILRRAGQSLIAVIGLLVLVFFLSRL-TGDPAYLYLPLDSSEAQRQAFSETH---GF 56
           M  ++LRR    +  V+   V++F + RL TGDPA  YL L +     +  + T    G 
Sbjct: 1   MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL 60

Query: 57  NDPLVVQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVG 116
           + PL VQ+G +L      DFG + +  RP ++  L   P TL+LA  A+VL L  +V +G
Sbjct: 61  DQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG 120

Query: 117 SLAAARPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSGTGTALHWIMPI 176
             AA   + L D      +  G S P+FW+A + ++ FSV L  LP  G G   H I+P 
Sbjct: 121 IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPA 180

Query: 177 FVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNRSRIVFRHALRNSLLPVITVAGD 236
             +      +  +++R +M+      +V  AR +G+N  +   RH LRN+ LP+IT  G 
Sbjct: 181 VSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGM 240

Query: 237 LAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQATVLVTAIAIFVLNIAIDLVYA 296
               L+ G +++E IF WPG+G+  + AI  RD+ +IQ   L+  +   V N+ +DL+ A
Sbjct: 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNA 300

Query: 297 RLDPRIR 303
            LDPRIR
Sbjct: 301 ALDPRIR 307