Pairwise Alignments

Query, 502 a.a., peptide ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  127 bits (318), Expect = 1e-33
 Identities = 131/511 (25%), Positives = 221/511 (43%), Gaps = 57/511 (11%)

Query: 1   MTIRYCTRAVALLTATLFSGVAMAAEGE-VKIVLPEQPANLDPCRSIRSDIGRIINSNIT 59
           M+ +    A A+L A     V+M A  + ++I       +LDP  S+   +   + +N+ 
Sbjct: 1   MSFKKNVAAAAVLCA--LGAVSMVASAQTIRIANQGDALSLDP-HSLNESLQLSVTANVY 57

Query: 60  ETLTVIDTEKGTVGPWLAEKWEQVDDLTWRVHLKSGVKFQDGAAFDAEAVVKSINRLMNP 119
           ETL   + +  ++ P LA  W+Q     WR  L+ GV F DG  F A+ VV S  R    
Sbjct: 58  ETLVGRNKDL-SLAPLLATSWKQTSPNVWRFELRKGVVFHDGTPFTADDVVFSFARAQGD 116

Query: 120 GLTCDSRSKFGDVKLTPKAVDAQTVEISSDSPVPIMPTLLGTVQIVSPNMPFDKESNDPV 179
           G   D R+   D+K   K  D   VEI ++ P PI+P ++    I+S     + ++  PV
Sbjct: 117 G--SDMRATLSDIKAVRKVGDL-AVEIETNGPFPILPDVISLTMIMSKKWCEENQATKPV 173

Query: 180 ---------------GTGPY-VVESKSNEQIVLKRHDAYWG-AKPDVTRATYVWRSESAI 222
                          GTGP+ V E + N + V  R+  YWG    +     +   +  A 
Sbjct: 174 DRRKGIENTASFKANGTGPFRVRERQPNVRTVFTRNGTYWGKIDGNAQEVIFTPIANPAT 233

Query: 223 RAAMVESGEADMTPSIAVQD------------ATNAESDFAYLNSETTRMRIDAQ----I 266
           R A + SGE D+   + VQD             T  E    +L  +  R  +        
Sbjct: 234 RVAALVSGEVDVMEPVPVQDIARINAAPNARVITGPEMRTIFLGMDQKRDELQYSNVKGK 293

Query: 267 PPLDDVRIRKALNMAIDWDGMGEALFGKDVLRASQMVVPGVRGHNPD-IKPWTYNPEEAM 325
            P  D R+R+A   AID  G+   +        + +V PG+ G   +  K   Y+ E A 
Sbjct: 294 NPFKDKRVRQAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTAEQDKRLPYDVEAAK 353

Query: 326 KLVEEAKAAGAPVDKEIVLIGRNGFFPNSAESLEAMRSMWQEIGLNVS-IRQLEAADWVR 384
           KL+ E   AG P   E+ L   N  + N  +  +++ S   +IG+ ++ + + +   + +
Sbjct: 354 KLLTE---AGYPNGFEVSLNCPNDRYVNDGQICQSVASNLAKIGVKINLVAETKGTYFPK 410

Query: 385 YLDKP---FPEGRGPTLFQQQHDNNTGDAGFTAPVMYLSEGQYS--TIADPDLDVVLKKA 439
            L +    +  G  PT +    D++   +  T+       GQ++     +P LD + KK 
Sbjct: 411 VLRRDTSFYMLGWTPTTY----DSHNALSSLTSCPDDKGTGQFNLGAYCNPKLDELTKKI 466

Query: 440 MA-ATGDEREKLFQEVFAKVHDEIVADVPMY 469
            +    D+R ++ +E F K+H + V  +P++
Sbjct: 467 QSEGDKDKRNEMIKEAF-KIHADDVGHLPLH 496