Pairwise Alignments

Query, 502 a.a., peptide ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 530 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 116/422 (27%), Positives = 183/422 (43%), Gaps = 47/422 (11%)

Query: 4   RYCTRAVALLTATLFSGVAMAAE----GEVKIVLPEQPANLDPCRSIRSDIGRIINSNIT 59
           R   R  A+    + +   +AA+    G +  ++   PA++ P  +       I    I 
Sbjct: 8   RSLARQAAVAAIAVLAAWTVAAQPRQGGTLTWLVNPVPASIVPLTTTAGGNAEI-GPKIV 66

Query: 60  ETLTVIDTEKGTVGPWLAEKWEQVDD-LTWRVHLKSGVKFQDGAAFDAEAVVKSINRLMN 118
           E L   D +     P LA  W Q  D L +   L+ GVK+ DG  F +  V  SI  L  
Sbjct: 67  EGLLTYDYDLKPK-PLLATAWSQSKDGLQYTFELRKGVKWHDGKDFTSADVAFSILTLKQ 125

Query: 119 PGLTCDSRSKFGDVKLTPKAVDAQTVEISSDSPVPIMPTLLGTVQIVSPNMP-------- 170
             +    R  F +V +  K  DA T  I    P P + T L + +  SP +P        
Sbjct: 126 --VHPRGRGTFANV-VDVKTPDANTAVIVLSKPSPFLLTALASTE--SPIVPKHLYEGTD 180

Query: 171 --FDKESNDPVGTGPYVV-ESKSNEQIVLKRHDAYWGA-KPDVTRATYVWRSESAIRAAM 226
              +K ++ PVGTGP+V  E      I+L+R+  YW   KP + R    +  +SA RAA 
Sbjct: 181 IASNKYNSAPVGTGPFVFKEWVQGSHIILERNPNYWDKPKPYLDRVVVRFVLDSAARAAA 240

Query: 227 VESGEADM---TPSIAVQDATN------AESDFA---YLNSETTRMRIDAQIPPLDDVRI 274
           +ESG AD+   T  I + D          + D     YL S   ++  +   P L  + +
Sbjct: 241 LESGAADLANGTGGIPLSDVERFGKLPGVQIDTRISPYLGSHQ-QIYFNLDTPALQKLEV 299

Query: 275 RKALNMAIDWDGMGEAL-FGKDVLRASQMVVPGVRGHNPDIKPWTYNPEEAMKLVEEA-- 331
           R+A+  AID +   + + +G   L AS +     R H+  I+P+ +NP+EA   ++ A  
Sbjct: 300 RRAIAQAIDVNAFAKTVWYGYGTLSASPIGKGISRYHDASIQPYPFNPKEAEAALDAAGF 359

Query: 332 -KAAGAPVDKEIVLIGRNGFFPNSAESLEAMRSMWQEIGLNVSIRQLEAADWV--RYLDK 388
            + AG    K  VL   N F      + + +R     IG++ ++   + A +V   Y D+
Sbjct: 360 KRGAGGTRLKLRVLY--NPF--QERRAADFVRQSLGRIGIDATVESYDFATYVTKAYTDR 415

Query: 389 PF 390
            F
Sbjct: 416 AF 417