Pairwise Alignments

Query, 627 a.a., acetoin catabolism regulatory protein from Sinorhizobium meliloti 1021

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  402 bits (1034), Expect = e-116
 Identities = 250/675 (37%), Positives = 373/675 (55%), Gaps = 75/675 (11%)

Query: 5   SEHIREIERVSRGLPVR--RDETVVKSWLRCLEHHRLDPAQSCEAYIVPETRLREHRQQS 62
           + H R++  V+ G       D ++ +SWLRCLE + LDPA      ++   RL E R++ 
Sbjct: 7   TRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERL 66

Query: 63  EDLIAIARSGLENLFRQVAGQNYVLLLSDREGVTVEFLGDPLFGNSLRKAGLYLGSEWSE 122
             ++ IA   + +L +Q++G  + +LL+D  GV +  +  P    S  +AGL+LG++WSE
Sbjct: 67  HQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSE 126

Query: 123 WRAGTCAVGACLETGEALTIHQTDHFDNTHTPLSCTAAPIYDIQGELSAVLDISLLSSPI 182
            R GT  +G CL   +ALTIHQ +HF   HT L+C+A+P++D  G+L AVLD+S     +
Sbjct: 127 AREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDV 186

Query: 183 LKASQNLALHLVSATVRRIELANLMAQARNQWVLRFSRSPEFLDVDPEAAISIDGLGRIA 242
            + SQ   + LV+ + + IE    +     QW+LRF    E + +  E  ++ DG GRI 
Sbjct: 187 SRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRIC 246

Query: 243 GMTHAGAKILARSTGLDWRDPQQLIGEPVSRFFDIEVDNLSDLTRRRPTRERLVFAR--D 300
               +   +L    G        ++G+P+  FF    D +   +R  P    +   R  D
Sbjct: 247 AANQSALNLLGTVRG-------GVLGKPLECFFACSHDEM--FSRATPGGSAVWPLRTLD 297

Query: 301 GNALFAHAIEPHSKVRAPLVSREQIPPALRRLGGDA-PVIAALQ-------AKAAKLART 352
           G  +FA       + RAP+ S   +P A  R  G+  P++  L         ++ ++   
Sbjct: 298 GRQVFASL---RGQARAPVWS---VPAAQPRPAGEVEPLVCLLDPALQNDFRRSVRVFER 351

Query: 353 RLPILIQGETGTGKEHLARAIHEGSGLEG-PFVAINCAAIPEQLIESELFGYLPGAFTGA 411
            +P+L++GETG GKE  A+A+H+ S   G PFVAINCA+IPE LIESELFGY  G+FTGA
Sbjct: 352 DVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGA 411

Query: 412 SAKGRKGLIEQADGGTLFLDEIGDMPLALQSRLLRVLAEGEVLPVGGTAPRKVRIRIVSA 471
             +G +G + QADGGTL LDEIGDMPLALQ+RLLRVL E +V+P+GG  P+ V +RIVSA
Sbjct: 412 RKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGG-EPQAVDVRIVSA 470

Query: 472 SHRPLQTLVSQGAFREDLYYRLNAATLTLPALRDRPDFDWVLEQLLKRHGDGELI-LSPA 530
           +HR L   V QG+FREDLYYRLN   + LPA+R+R D   +L+ LL++   G+ I + P 
Sbjct: 471 THRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQGQWIDIEPR 530

Query: 531 ALSALKAHDWPGNIRELDNVIGVAAALAENGVVELGDLP-------------------DQ 571
           A  AL A +WPGN+R++ NV+    AL E+  +   DLP                   DQ
Sbjct: 531 ARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQ 590

Query: 572 LL-----------ANADTVGG-----NEASAT----------LSLTLTACNWNISEAARR 605
            +           A +   GG      E++ T          L   L A +W+++  A  
Sbjct: 591 EMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEH 650

Query: 606 LGLDRSTVHRQIKRY 620
           LG+ R+T++R+++++
Sbjct: 651 LGISRNTLYRKLRKH 665