Pairwise Alignments

Query, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

 Score = 70.1 bits (170), Expect = 2e-16
 Identities = 89/325 (27%), Positives = 133/325 (40%), Gaps = 33/325 (10%)

Query: 8   KPTKKAAPSSAAKKAGGFP----LPVSTAPMEARSATELPGGDA-WQYEPKWDGFRCLAF 62
           +P KK    + AK     P    LP +  P  A  A   P     W YE K+DG+R LA 
Sbjct: 197 QPAKKMPAKAPAKVQAKAPKKVALPATLQPQLATLAASPPASPGDWLYELKFDGYRLLAR 256

Query: 63  KSGDEVDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELVIE-VDGRLSFDALQMRLH 121
               +V    ++G       P +   L +L      LDGE+ +E  +G   F ALQ    
Sbjct: 257 IDKGKVRCFTRNGHDWTAKLPALAEALAKLSTGAAWLDGEITVEGENGAPDFQALQNAFD 316

Query: 122 PAASRVQKLSQETPAKLILFDMLAGTDGTILTGEPLQTRRACLEAFAKKNAVAEMLESSP 181
             A+        +     LFD     DG  L   P++ RRA L     K   A +  S  
Sbjct: 317 RGAT--------SAIVYWLFD-APFLDGEDLRELPVEERRARLAKLLGKKPPAPLRLSEA 367

Query: 182 FTLDIKEAERWLTSWEAGATDGVVAKRRDGVYECGERA-MVKVKRLKTADCVVGGFRYES 240
           F    ++    L S      +G+V KR+   Y        +K+K  +  + V+GG+    
Sbjct: 368 FDAAPRDL---LASSARIGFEGIVCKRKGSPYVPRRSPDWIKLKNQQRQEFVIGGYTAPK 424

Query: 241 DSSL-VGSLLLGLYD-TEGLLNHVGFTATISDKERPA-LTNQLEAL-REPPGFTGKAPGG 296
            +    G+LLLG++D   G L + G   T  D +R A +  +L+ L  +   F+ +  G 
Sbjct: 425 GARAGFGALLLGVHDEATGRLRYCGNVGTGFDAKRLADIKARLDRLATDDCPFSPQPRGV 484

Query: 297 PSRWSSERSGEWEPVRPELVVEVRF 321
            ++W          V+P LV EV F
Sbjct: 485 KAQW----------VKPSLVAEVSF 499