Pairwise Alignments

Query, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 837 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

 Score = 89.0 bits (219), Expect = 4e-22
 Identities = 100/342 (29%), Positives = 149/342 (43%), Gaps = 31/342 (9%)

Query: 2   ASSAHGKPTKKAAPSSAAKKAGGFPLPVSTAPMEARSATELPGGDAWQYEPKWDGFRCLA 61
           A++AH     K    + A+      +P    P  A     +P G+ W +E K+DG+R L 
Sbjct: 212 AANAHNARIGKTKGRAKARTEA---MPRFIKPQLATLVDNVPVGNEWMHEIKYDGYRALV 268

Query: 62  FKSGDEVDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELV-IEVDGRLSFDALQMRL 120
             SG+ + I  +SG      F  +   ++ L+    ++DGE++  + DG  SF ALQ  L
Sbjct: 269 AVSGEAIKIYTRSGLDWTDKFSPLAGAIKALDLPPALIDGEIIAFDADGNPSFSALQAVL 328

Query: 121 HPAASRVQKLSQETPAKLILFDMLAGTDGTILTGEPLQTRRACLEAF----AKKNAVAEM 176
                  +    +TP     FD+L+  DG  L   P   R+  LEA      +   VA+ 
Sbjct: 329 KRGHGAER---ADTPFHFFAFDLLS-LDGMDLKSLPAIERKERLEALLADAEQPIHVADH 384

Query: 177 LESSPFTLDIKEAERWLTSWEAGATDGVVAKRRDGVYECGE-RAMVKVKRLKTADCVVGG 235
           L        I   E+   S      +G++AKR D  Y  G  RA VKVK  +  + V+ G
Sbjct: 385 L--------IGSGEKLYRSLCQAGQEGIIAKRVDAPYRSGRTRAWVKVKCTRRQEFVIVG 436

Query: 236 F-RYESDSSLVGSLLLGLYDTEGLLNHVGFTATISDKERPALTNQLEALREPPGFTGKAP 294
           + R ++      SLLLG ++   L+ + G   T  D     +T+  EA+   P  TG  P
Sbjct: 437 WTRSKAKGRAFSSLLLGQHEGSELV-YKGKVGTGFD--AATMTDLAEAM--GPISTG-TP 490

Query: 295 GGPSRWSSERSGEWEPVRPELVVEVRF-DHVSNRRFRHGTKL 335
                    R  +W  V P LV EV F +     R RHG+ L
Sbjct: 491 QVIISAREARDVQW--VEPRLVAEVSFAEFTGEGRVRHGSFL 530