Pairwise Alignments

Query, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score = 92.0 bits (227), Expect = 5e-23
 Identities = 102/355 (28%), Positives = 150/355 (42%), Gaps = 31/355 (8%)

Query: 11  KKAAPSSAAKKAG---GFPLPVSTAPMEARSATELPGGDAWQYEPKWDGFRCLAFKSGDE 67
           K  AP S+ K+A      PLP    P  A      P GD W+YE K+DG+R LA   G +
Sbjct: 194 KATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGD-WRYEVKFDGYRILARIEGQD 252

Query: 68  VDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELVI-EVDGRLSFDALQMRLHPAASR 126
           + +  ++G       P  VA LR L  D   LDGE+V+ + +G   F ALQ         
Sbjct: 253 IRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQALQ--------N 304

Query: 127 VQKLSQETPAKLILFDM--LAGTDGTILTGEPLQTRRACLEAFAKKNAVAEMLESSPFTL 184
                 +      LFD+  L G D   L   PLQ RR  L    + N    +  S+ F  
Sbjct: 305 AFDTEHDERITYYLFDLPFLGGQD---LRQLPLQNRRNTLRQLLEHNHCDVIKYSADFD- 360

Query: 185 DIKEAERWLTSWEAGATDGVVAKRRDGVYECGERA--MVKVKRLKTADCVVGGFRYESDS 242
             +  +  L S      +G++ KR D VY  G R+   +K+K  +  + V+ G+     S
Sbjct: 361 --EPVQSLLDSACRLKLEGLIGKRVDSVYS-GRRSPDWIKLKCKQRQEFVIVGYTDPKGS 417

Query: 243 -SLVGSLLLGLYDTE-GLLNHVGFTATISDKERPALTNQLEALREPPGFTGKAPGGPSRW 300
            S  G+LLL L+D + G L + G   T  +    A    + A  +P      A   P   
Sbjct: 418 RSGFGALLLALHDNDSGQLRYAGKVGTGFNATTLA---SIHARLKPLEIARPALPSPPAG 474

Query: 301 SSERSGEWEPVRPELVVEVRFDHVSNRRFRHGTKLMRWRPDKDPRQCTYQQIMPS 355
           +  R   W  +RP+L+ EV F  ++       +     R DK       ++ MP+
Sbjct: 475 AEARGVHW--LRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPA 527