Pairwise Alignments

Query, 912 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

Subject, 917 a.a., protease3 from Alteromonas macleodii MIT1002

 Score =  204 bits (519), Expect = 2e-56
 Identities = 223/924 (24%), Positives = 392/924 (42%), Gaps = 70/924 (7%)

Query: 17  VLALCSLTPIQAFADLQKVTEVEGISEYRLDNGLKVLLFPDPTKETVTVNVTYKVGSKHE 76
           VLA+ S     AFA      + E   ++  DNGL V++  D     V V V YKVGSK E
Sbjct: 17  VLAVSSTLVGSAFAKNDINIDYE---KFTTDNGLTVIVHEDRKAPVVAVAVWYKVGSKDE 73

Query: 77  NYGETGMAHLLEHLVFKGTPKHKD-IPAELSSHGARP-NGTTWTDRTNYFETFAATEENI 134
             G++G AHL EHL+F GT  + D     L   GA   NGTT  DRTNYF+T       +
Sbjct: 74  PNGKSGFAHLFEHLMFNGTENYDDEWFGPLQEAGATGLNGTTNFDRTNYFQTVPTPA--L 131

Query: 135 DWALSMESDRM--VNSFIAKKDLDSEMTVVRNEFERGENSPFRITLQRMMASAFE-WHNY 191
           D  L MESDRM  +   + ++ LD +  VV+NE  +GE+ P+      +    F   H Y
Sbjct: 132 DRILWMESDRMGHLLGAVTQEKLDEQRGVVQNEKRQGEDQPYGSVFTHIFEGLFPIGHPY 191

Query: 192 GKSTIGARSDLENVSIERLQDFYRKYYQPDNATLIVAGKFAPEDMLKKIEATFGNIPKPN 251
             + IG+  DL + S++ ++ ++ +YY P+NA L+++G    E+    +   F +I +P 
Sbjct: 192 HHTVIGSMEDLNSASLDDVKGWFNQYYGPNNAILVLSGDINAEEAKPLVNKYFADI-EPG 250

Query: 252 RTIEPLYTVEPAQDGERQVTVRRVGDVQLLGTIYHVPPGAHEDYAAIDVLNEVLSATPNG 311
             +       P ++   +  ++       +  ++  P         + +   V+    N 
Sbjct: 251 PALSKWEAWVPKRNANTREVIQDKVPQSRIYRLWVSPENTSSTATDLFIAASVMGDGKNS 310

Query: 312 RLHKSLV-EAKLASSVFGMNFQWQDPGVAIFMAEMDKTADMDATQKALLDTL-ESIRNTP 369
           RL+K LV + ++A++    N++ Q   +     ++    D+   +K +   + E +R  P
Sbjct: 311 RLYKELVYDQQIATNASVFNYELQMASIFGVTVDVKDGVDVATVEKEIDKVISEFLRKGP 370

Query: 370 ITD--KEVETAKR-TLLKNLTLAFNSSERVALELSEWLGMGDWRLLFLNRDRLEKVSAAE 426
             D  K V T +R ++++ L        +     S     GD          L + +   
Sbjct: 371 SKDEVKLVSTKRRASIIRGLEEVGGFGGKADTLASGEFIAGDPNYFKTELSELGQATPKG 430

Query: 427 VQRVAEYYLTQNNRTLGRFIPAEKPARVEIPLVADVDALVKDYKGREQVAQGEAFDPSH- 485
           V+  A  +L +    +             +P +             E  A  E  D S  
Sbjct: 431 VKAAANKWLKEGWHQI-----------TVVPFI-------------EHTASTEGVDRSSG 466

Query: 486 -TNIDSRTE-------TLTLNSGTKVSLLQKKTRGESVVVRISGQFGDLRSLSGKNAVGD 537
             +ID+ T+         TL++G KV +  K++    V V +    G      GK  +  
Sbjct: 467 LPSIDAETQLSFPEVTETTLSNGVKV-VFAKRSTVPLVNVAVQFDAGYAADAGGKLGLAS 525

Query: 538 AVGEMLLRGSSKYSREQIKEELDKLQASLRIGGSNGNLFASVETTRANLLPVLDIVTDVL 597
              +ML  G+ KY   ++  EL++L   L  G +      ++     N+ P L ++ D+L
Sbjct: 526 FTTQMLDEGAGKYDALELAAELEQLGTDLNAGSNLDTTTVTMSMLTENMEPSLALMGDIL 585

Query: 598 RNPSFPEKEFELYKTETKVAIEQNLQDPQSLAFNAYSRHQSPYGKDDP---RYVGTFEEQ 654
           ++P+F E+E E  +      I Q    P S+A          YG+       + GT  EQ
Sbjct: 586 KSPTFKEEEIERQRALILSNIAQQKTRPVSIALTLLP--PLIYGEGHAYGIPFTGTGTEQ 643

Query: 655 LAELDKLTLKQVKRYHGDFYNAKQMQVSIIGDFDKDATVSALDTLTKGWK--SKQTYQRI 712
             ++  +T   +  +   +       + ++GD    A    L+     WK    +  ++I
Sbjct: 644 --DVQAITRDDLVNFKNTWLRPDNATIFVVGDTTLGAIKPMLEKEFGKWKVEGSKGAKQI 701

Query: 713 ASPYVKLDASPITFNTPDKENATFVASLSLPVGDMDADAPALTLGNYILGGGFLSSRLAT 772
           A   +      I  + P  + +  +A+   P    D +  A+   N  LGG F ++R+  
Sbjct: 702 AEASMPEQGQAIIIDRPGAQQSLILAAHLAPPTGADNNI-AINAMNLTLGGAF-TARVNM 759

Query: 773 RLRQKDGLSYGAGSFLRLSSEDQRGSLGAYAICAPQNLAKVE---LGFREEI-ARLLKDG 828
            LR+    SYGA +FL    +D RG    + + AP    K     L  ++E+ A L +  
Sbjct: 760 NLREDKSWSYGAYTFL----QDARGQ-RPFMVYAPVQTDKTGPSLLELKKELNAYLGEKP 814

Query: 829 FTADEVEAAKSGLLQGRKVSRSQDKELVGTLVGNLKLDRSMAFDADFEAKLAALTADDLN 888
             A+E+E A+   ++           ++ +L+ + + +R  ++      K  +L+ DDL+
Sbjct: 815 PMANELERARLDEVRSLPGQFETANAVLYSLLSSERFNRQYSYPESLVEKYNSLSLDDLS 874

Query: 889 KAFRKYIKVDDFALIKAGDQSKVE 912
            A ++ +  +  A I  GD  K++
Sbjct: 875 NAAKEVLHPEKLAWIIIGDAEKIK 898