Pairwise Alignments

Query, 244 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 276 a.a., Probable signal peptide protein from Variovorax sp. SCN45

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 41/229 (17%)

Query: 1   MMKLNKTLLVLATIACSSGVMAEEAKVFGGTLGGKLTIASDYVFRGESETMDGD------ 54
           ++++   +LVL T+A           +    L G +   +DY FRG+ + M G       
Sbjct: 4   LIRIALPVLVLPTLAALP-------MLANAQLSGNVAFTTDYKFRGQDQDMLGKNDYAKT 56

Query: 55  ---VPAIQGTLSWS-NDAGWYAGFFGSNIKFADPNL--EVVTGPFIGKAGEFGESGFTYD 108
               PAIQG   ++  D+G+Y G + S++ +   N     + G +  KAG F       D
Sbjct: 57  KAFKPAIQGGFDYAFGDSGFYVGNWNSSVNWLKGNSIESDIYGGYKFKAGVFD-----MD 111

Query: 109 VMVFSYLYPGASYSNYTELWLKVG---RQFGQLNMQLEVTPTLDDWFGVA------GWQG 159
           V   +Y+YPG S  N TE++   G      G   ++   T +  D+FG A      G +G
Sbjct: 112 VGALTYIYPGNSSGNTTEVYGSAGYTDETIGSFTLKYSHTVS-KDYFGYAGNKAGSGLKG 170

Query: 160 VNYA-IHPSYSFD--NGVQLSGSVGYQDLDGE----GAEGWGHWNLGVS 201
            N   ++ +YS +    V L  +VGY ++  +    G + +  +N+G S
Sbjct: 171 TNTGYLNLAYSKEVFPKVTLKAAVGYTNMSSDIRRLGYKSYVDYNVGAS 219