Pairwise Alignments

Query, 233 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 219 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 73.6 bits (179), Expect = 3e-18
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 31/230 (13%)

Query: 6   ILSEAYNFFRNHLGQLAALTIPLLLAQTGIQLWLGSEFAKVDVNNPQFGSPHF--FAMMM 63
           +L +++ F + +LG +  L +PL++ +  +Q           V N   G   F  +++++
Sbjct: 6   VLRDSFRFTQRNLGAIVQLCLPLVIFEALLQ----------QVLNHVVGPDAFPGYSVVV 55

Query: 64  MLIIFSVLIAALTLYLQLRSEGHELSTGAVLKASLPFVPPLLLAGVFSGMAIAAPVIIAA 123
            L+++ +   AL L+L  R+ G    T  V   +L   P   L    S + I        
Sbjct: 56  GLLVYPLYTGALILFLDARTRGESPGTKDVWAMALTLWPRFALLTAMSTLLI-------- 107

Query: 124 AFGPLWLIGLGI----SLYLFARLAYVNFMVVVERLTPLEAIKASFRFSSS-IVSKTVAL 178
                 L+GL +     L+L   LA+  +++V+  +  LEA+K SFR S        V L
Sbjct: 108 ------LLGLSLYFLPGLWLMVVLAFAEYLLVLRGMPALEAMKESFRLSRGHFWLILVCL 161

Query: 179 LLLYVPLSLVGGTLSQLVAGVGLPLQLIVDAGFSFIALFVNVALFRLYMV 228
           L +  PL L+ G            L L++D+  SF+ LF +V LFRL+M+
Sbjct: 162 LCVMTPLWLLKGASVAAYPTPAPLLGLLLDSAHSFLQLFTSVVLFRLFML 211



 Score = 23.5 bits (49), Expect = 0.004
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 155 LTPLEAIKASFRFSSSIVSKTVALLLLYVPLSLVGGTLSQLVAGVGLPLQLIVDAGFSFI 214
           + PL+ ++ SFRF+   +    A++ L +PL +    L Q++  V  P     DA F   
Sbjct: 1   MNPLDVLRDSFRFTQRNLG---AIVQLCLPLVIFEALLQQVLNHVVGP-----DA-FPGY 51

Query: 215 ALFVNVALFRLY 226
           ++ V + ++ LY
Sbjct: 52  SVVVGLLVYPLY 63