Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 710 a.a., sigma-54-dependent Fis family transcriptional regulator from Variovorax sp. OAS795

 Score =  381 bits (979), Expect = e-110
 Identities = 254/681 (37%), Positives = 365/681 (53%), Gaps = 99/681 (14%)

Query: 9   LADSW-RRSEGAGLSET-RPGELKLSRVELDERCERHRQLIALVESEALPLFTRLM---A 63
           L + W +R    GLS   RP    + R +L    ER+++L     + A P+   L+    
Sbjct: 33  LIEQWHQRCAALGLSRVERPDFEPMRRSDLVVARERNQRLF----THAAPVMEMLLEQIV 88

Query: 64  HTDSRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALS 123
           +TDS ++L+D  G +L   G  R+  R   VAL  GV+W E  KGTNAIGT L  +    
Sbjct: 89  NTDSMIVLADTTGTILHSVGDDRFLQRANKVALTPGVSWAEHSKGTNAIGTTLVEETPTV 148

Query: 124 VVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVETAL 183
           V G +HF   + F++C+A+PIF P GE++G LD+T ++  ++Q T+ L+   A+ +E   
Sbjct: 149 VHGGEHFIHANNFLTCSAAPIFDPRGEMLGVLDVTGDQRSYHQHTMGLVRMSARMIENQW 208

Query: 184 LCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLGELL 243
           L    G R R+      + + +  +GI++   +G++LG N  A   L  +   +++  L 
Sbjct: 209 LSDDYGNRLRLHFHGRAEFIGTLLEGIIVVGADGKILGANRSALDQLDMSIAAVRMQSLA 268

Query: 244 G----------DDWRA-----QQAQCLRGEL-HLA------------------------- 262
                      D +R+          + G+L H++                         
Sbjct: 269 SLFGITASAVFDHFRSPLPAPMMLHAVSGQLFHVSARFNGPQRSVVLDMPVSSVEPRMPE 328

Query: 263 -------TSAIGEGALWIQTNKA--SSLHGVKPLRFHDPQLETAWQQARKVVSRKIPLLV 313
                  ++A G+ A   Q   +  + L G+  L   D Q+     + R+V++R IPLLV
Sbjct: 329 EPNARPSSAARGDEAAARQAGPSPHAPLSGLHYLDTGDAQIAATLLKVRRVINRDIPLLV 388

Query: 314 QGETGVGKEHFVRQLYQDS-RLDGELVAVNCAALPTELIEAELFGYQGGAFTGASRQGHL 372
            GETG GKE   R ++QDS R     VAVNCA++P  LIEAELFGY+ GAFTGA R+G +
Sbjct: 389 LGETGTGKELLARAVHQDSNRARQPFVAVNCASIPESLIEAELFGYEEGAFTGARRKGAV 448

Query: 373 GKVRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGGLKSHRVDIQVVAATHMDLA 432
           G++ QA GG LFLDEIG++PL+ Q RLLRVLQER VTP+G LKS  VDI V+ ATH +L 
Sbjct: 449 GRIVQAHGGTLFLDEIGDMPLSLQARLLRVLQERNVTPLGSLKSIPVDIAVIGATHRNLR 508

Query: 433 EMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPPGDEQRLCPQLLA 492
           EM+  G FREDLY+RLNGL V LPPLR+R+D   +  ++        P D   + P +LA
Sbjct: 509 EMIAAGTFREDLYYRLNGLVVKLPPLRERSDLDVVARRI---LLAECPQDTPEIAPAVLA 565

Query: 493 LLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAH----RRALMQARPFYSG--- 545
           L +AYAWPGNLR+L N+++ A +M+ GER + + HLSD      RR L QA P  +    
Sbjct: 566 LFKAYAWPGNLRQLANVLRTAAVMSAGERHICEHHLSDDFLEDARRVLSQAAPGAAAPAP 625

Query: 546 ------------------------RMNSESSQSSAESSLK----AELDGRIQNTLADCDG 577
                                     +SES   +A  + +    AE+D  I++ LA  DG
Sbjct: 626 SAPQAAALPQAAHAAAPPEHTMPPLRDSESLPVAAPEAPRTLGEAEID-MIRSALAAADG 684

Query: 578 NISEAARRLGVSRNLIYRSLK 598
           NIS A++RLG+SRN IYR L+
Sbjct: 685 NISVASKRLGISRNTIYRKLR 705