Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 634 a.a., sigma-54-dependent Fis family transcriptional regulator from Ralstonia solanacearum PSI07

 Score =  299 bits (765), Expect = 3e-85
 Identities = 214/631 (33%), Positives = 329/631 (52%), Gaps = 70/631 (11%)

Query: 4   AVQPWLADSWRRS-EGAGL---SETRPGELKLSRVELDERCERHRQLIALVESEALPLFT 59
           A  P +A SW R     GL   + + P  L+ +R+   ER ER + ++ + + E   L  
Sbjct: 31  AADPSIARSWLRCLRQHGLDPANASAPAVLEAARIR--ERRERLQPVLRIADGEMHSLH- 87

Query: 60  RLMAHTDSRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAK 119
           R +A +   ++L+DA+G +L                L  G +W E  +GTN IGT +  +
Sbjct: 88  RQLAGSGHVVVLTDADGVILDCIADHAERTLFQQAGLWSGADWSEAREGTNGIGTCVVER 147

Query: 120 EALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQ----TLLLISSL 175
           +AL++  ++HF   H  +SC+ASP+F P G L+  LD++S   + ++Q    T  L++  
Sbjct: 148 QALTIYQDEHFRSRHIQLSCSASPVFDPHGHLLAVLDVSSIPRELSRQGQFHTTALVNLS 207

Query: 176 AQQVETALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASP 235
           A+ +E           + +   A  + +    +G+L    +GR+   N  A   LG    
Sbjct: 208 AKVIEGGYFLQHFERDWLLRFHAQPEYVGLFSEGLLAVGGDGRIRAANQSALNLLGRTRQ 267

Query: 236 GMQLGELLGDDWRAQQAQCLRGELHLATSAIGEGALW-IQTNKASSLHGVKPLRFHDPQ- 293
                 LLG     +    L  +  LA +    G  W ++T++   L G+  LR   P+ 
Sbjct: 268 S-----LLGQP--VETVFDLPADALLARATDSGGVAWPLRTHQGRLLFGL--LRAPRPRP 318

Query: 294 -----------------------LETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQ 330
                                  L   + +A +V    +PLL+ GETG GKE F R +++
Sbjct: 319 VADATLASQPVQATPGLCLQTEGLRADFHRALRVFEHDVPLLLHGETGTGKEAFARAVHR 378

Query: 331 DSRLDGE-LVAVNCAALPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIG 389
            SR   +  +AVNCAA+P  LIE+ELFGY+GG+FTGA R+G  GK++QADGG LFLDEIG
Sbjct: 379 ASRRAAQPFIAVNCAAIPETLIESELFGYRGGSFTGARREGMRGKLQQADGGTLFLDEIG 438

Query: 390 ELPLAAQGRLLRVLQEREVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLN 449
           ++PLA Q RLLRVL+ER V P+GG ++  VD+++V+A+H D+   VRDGRFREDLY+RLN
Sbjct: 439 DMPLALQSRLLRVLEERAVVPIGG-EAQAVDVRIVSASHRDMEAHVRDGRFREDLYYRLN 497

Query: 450 GLQVSLPPLRQRADKSRLI-HKLHRQYRVNPPGDEQRLCPQLLALLEAYAWPGNLRELDN 508
           GL+++LPPLR+RADK+ L+ H L  + R  P     RL       L A  WPGN+R+L N
Sbjct: 498 GLRITLPPLRERADKAALLAHVLAEESRGRP----VRLDDDARDALLAQPWPGNVRQLRN 553

Query: 509 LMQVACLMAEGERELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRI 568
            ++    +++          +D   +A   A P            S+ +++L A L+ R 
Sbjct: 554 ALRTLVALSDDGCIRMGDLPADLRPQAAELAPPL----------DSAEKTALLAMLEAR- 602

Query: 569 QNTLADCDGNISEAARRLGVSRNLIYRSLKR 599
                    ++ + A  LG+SRN +YR L++
Sbjct: 603 -------QWHMMQTAEALGISRNTLYRKLRK 626