Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 602 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas sp. SVBP6

 Score =  363 bits (933), Expect = e-105
 Identities = 224/595 (37%), Positives = 333/595 (55%), Gaps = 30/595 (5%)

Query: 12  SWRRSEGAGLS-ETRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTDSRLI 70
           SW+R    GL  +++P   + S  ++ E  ER   L+     E LP +  L+ ++   ++
Sbjct: 15  SWQRCRAYGLDHQSQPQFGEASAAQVSELLEREHSLLGTTRDEVLPQYAHLLGNSSYLIM 74

Query: 71  LSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQHF 130
           LSD  G +L  WG  R+ +         G  W E+  GTNAIGTAL   EA+ V  ++HF
Sbjct: 75  LSDHLGQLLDAWGTRRFIEPRQRHGFVAGACWREQGVGTNAIGTALATGEAVHVSQDEHF 134

Query: 131 CRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVETALLCSLPGG 190
            + +RFM+  A+P+F    +LIG LD++S+      QT  L+  ++Q +E  L+ +   G
Sbjct: 135 LKLNRFMASAAAPLFDAERQLIGVLDVSSDSYLPAAQTQGLVRMMSQSLENRLILARFAG 194

Query: 191 RFR-VDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLGELLGDDWRA 249
            +R +        L S W G+L+ DD+GR+L  N  A   LG     + L +L    +R 
Sbjct: 195 DYRQLSFNTGANNLDSQWAGLLVFDDQGRVLAANRRADSLLGQNPLQLNLEQL----FRT 250

Query: 250 QQAQCL--RGELHLATSAIGEGALWIQTNKASSLHGVKPLRFH----DPQLETAWQQARK 303
              Q L    E   A    G        +  +      P+       DP+++ A QQA  
Sbjct: 251 PLVQLLGHSAEQPFAVQVTGRNRFHCLLHAPTQTPRATPVSHAQTTCDPRIDKALQQAGL 310

Query: 304 VVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGE-LVAVNCAALPTELIEAELFGYQGGA 362
           ++ + I LL++GETG GKE FV  L++ S   G+ L+AVNCAA+P EL+E+ELFGY+ GA
Sbjct: 311 LLEKDIALLIEGETGAGKEVFVNALHRASSRAGQPLIAVNCAAIPAELVESELFGYEKGA 370

Query: 363 FTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGGLKSHRVDIQ 422
           FTGA  +G++G +R+AD G LFLDEIG++PL  Q RLLR LQ R + P+G  +   VDI+
Sbjct: 371 FTGAHHKGNIGLIRKADRGILFLDEIGDMPLPTQARLLRFLQTRNIQPLGSGEPIPVDIR 430

Query: 423 VVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPPGD 482
           VV+AT+ +LA+ VR G FR+DLY+R+ GL + LPPLR+R+D+  LI +LH+QYR   PG 
Sbjct: 431 VVSATNQNLADQVRLGHFRQDLYYRIAGLSLMLPPLRERSDRLALIEQLHQQYR--EPGA 488

Query: 483 EQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQARPF 542
             +L  ++L LL  + WPGNLR+L +++QVA  +A G+  ++  HL D+    L  +RP 
Sbjct: 489 PTQLPGKVLELLLQHPWPGNLRQLASVLQVALALAGGQ-PIAVEHLPDSFFADLPASRP- 546

Query: 543 YSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSL 597
                 +     ++   L   L G         +GNIS  AR LG+SR  +Y+ L
Sbjct: 547 -----QAPVLPPASADDLGQRLQG--------LNGNISALARALGISRTTLYKRL 588