Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 634 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas sp. SVBP6

 Score =  291 bits (746), Expect = 4e-83
 Identities = 210/614 (34%), Positives = 310/614 (50%), Gaps = 46/614 (7%)

Query: 12  SWRRSEGAGLSETRPGELKLSRV-ELDERCERHRQLIALVESEALPLFTRLMAHT--DSR 68
           SWRRS   G+      +L L+ V  LD     +R L+    +E       L  H   D+ 
Sbjct: 40  SWRRSLDHGVGVHSQHDLGLAPVANLDLLLANNRLLLDAATAE----LDYLSGHQGQDAL 95

Query: 69  LILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQ 128
           +IL++A+  +L   G +          +  G  W E   GTNA+GTAL     + +   +
Sbjct: 96  IILANADATILAVEGPADVVRHSTEAGIAPGTRWSEAECGTNALGTALVEARTVQIDCGE 155

Query: 129 HFCRPHRFMSCTASPIFSPSGELIGALDITSER-LKHNQQTLLLISSLAQQVETALLCSL 187
           HF       SCT+ PI  P G+L G LD+T +  L   Q    L++    Q+E  L  + 
Sbjct: 156 HFLERLSDYSCTSVPIHCPQGDLFGVLDLTRQGPLGRLQDRTALLALAVSQIEGKLFNNS 215

Query: 188 PGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGG---ASPGMQLGELLG 244
              +  +   + RQ L S WQG+L    +GR+L  +  A Q LG    A  G +   LLG
Sbjct: 216 YPQQIVLAFHSRRQYLGSPWQGLLALGLDGRILAASNQACQLLGSQREALLGQRCDSLLG 275

Query: 245 ---DDWRA-------QQAQCLRGELHLATSAIGEGALWIQT------NKASSLHGVKPLR 288
              + W A       +  +  +G        + +  L +         +++    ++ L 
Sbjct: 276 MRLEQWLARVQPGSVESTETAKGGFFYKALQVPQRPLSVVVPAARAPRQSTQQPDLERLG 335

Query: 289 FHDPQLETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGE-LVAVNCAALP 347
             + +   A + AR+ ++  +P+++ GETG GKE   R L+QDS   G+  VAVNCAA+P
Sbjct: 336 AGNSRHARALRMARQGLANGLPVVLLGETGSGKEVVARALHQDSARAGKPFVAVNCAAIP 395

Query: 348 TELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQERE 407
             LIE+ELFGY+ GAFTG+ R G +G+++QA GG LFLDE+G++PLA Q RLLRVLQER+
Sbjct: 396 EGLIESELFGYREGAFTGSRRGGMIGRLQQAHGGTLFLDEVGDMPLALQARLLRVLQERK 455

Query: 408 VTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRL 467
           V P+G  +   +DI ++ ATH DL   V+  +FREDL++R++G+ V LP LR+R D   L
Sbjct: 456 VAPLGAGQEQDLDIALICATHRDLKAQVQSQQFREDLFYRIHGISVQLPALREREDLPAL 515

Query: 468 IHKLHRQYRVNPPGDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAE-GERELSQA 526
           +  L  +      G    L  +L AL   Y WPGN+R+L+  +++   M E GE+EL   
Sbjct: 516 VRSLLDRL----GGQGVELSSELSALFAGYHWPGNIRQLEMTLRLLLAMREAGEQELGLD 571

Query: 527 HLSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRL 586
           HL D     L  +    S RM    S               I+  L    GN++ AA  L
Sbjct: 572 HLPDNLLDELRDSARPPSTRMRDSQSV-------------LIRQALERHAGNVTAAAEAL 618

Query: 587 GVSRNLIYRSLKRT 600
           G+SR  +YR LK+T
Sbjct: 619 GISRATLYRKLKQT 632