Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 636 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. DMC3

 Score =  305 bits (781), Expect = 4e-87
 Identities = 225/623 (36%), Positives = 329/623 (52%), Gaps = 53/623 (8%)

Query: 7   PWLADSWRRS-EGAGLSET---RPGELKLSRVELDERCERHRQLIALVESEALPLFTRLM 62
           P +A SW R  E   L  +    P  L+  RV L+ R ER +Q++ +  +E   L  +L 
Sbjct: 30  PSIARSWLRCLEDYHLDPSVTMAPTVLEHGRV-LESR-ERLQQVLQIAGTEMSSLHQQLS 87

Query: 63  AHTDSRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEAL 122
                 ++L+DA G +L                L  G +W E  +GTN IGT L  ++AL
Sbjct: 88  G-AGHAVLLTDARGVILNCVTAPAERKIFERAGLWLGADWSEACEGTNGIGTCLVERQAL 146

Query: 123 SVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQ----TLLLISSLAQQ 178
           ++  ++HF   H  ++C+ASP+F P GEL+  LD++S R   ++Q    T+ L++  A+ 
Sbjct: 147 TIHQDEHFRGRHTGLTCSASPVFDPHGELLAVLDVSSARPDVSRQSQFHTMALVNLSAKM 206

Query: 179 VETA--LLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPG 236
           +E+   L C       R  L A    L S  +G+L  D EGR+  +N  A   LG    G
Sbjct: 207 IESCYFLRCFDNQWLLRFHLQAESVGLFS--EGLLAFDGEGRISAVNQSALNLLGHIRGG 264

Query: 237 M-----------QLGELLGDDWRAQQAQC---LRGELHLATSAIGEG---ALWIQTNKAS 279
           +            L +LLG       A      R   HL     GE       +    A+
Sbjct: 265 LLGKPVEAFFDCSLDDLLGRASANASASWPLRTRDGRHLFAVLRGESRKPTAIVPAPIAA 324

Query: 280 SLHGVKPLRFHDPQLETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGE-L 338
               +  +   D  L+  +++A +V  R +PLL+ GETG GKE F + ++Q S+  G   
Sbjct: 325 PAPRLSGICLGDEALQAEFRKALRVFERDVPLLINGETGSGKEAFAKAVHQASQRSGNAF 384

Query: 339 VAVNCAALPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGR 398
           VA+NCAA+P  LIE+ELFGY+GG+FTGA + G  GK++QADGG LFLDEIG++PLA Q R
Sbjct: 385 VALNCAAIPESLIESELFGYRGGSFTGARKDGMRGKLQQADGGTLFLDEIGDMPLALQTR 444

Query: 399 LLRVLQEREVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPL 458
           LLRVL++R+V P+GG +   VD+++++ATH +L E V DG FREDLY+RLNGL+V+LP L
Sbjct: 445 LLRVLEDRQVVPIGG-EPQAVDVRIISATHRNLLERVEDGSFREDLYYRLNGLEVALPAL 503

Query: 459 RQRADKSRLIHKLHRQYRVNPPGDEQRLC--PQLLALLEAYAWPGNLRELDNLMQVACLM 516
           R+R+DKS+L+  L         G E  L   P   ALL A+ WPGN+R+L N+++    +
Sbjct: 504 RERSDKSQLLDFL----LAEEAGGETILIDEPARQALL-AFNWPGNVRQLRNVLRTLAAL 558

Query: 517 AEGERELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCD 576
            +G R      + D     + QARP              AE          + N L    
Sbjct: 559 CDGGR----VGVEDL-PVMIRQARPAVVAAQIVAQPLDDAERV-------ALLNALEQTR 606

Query: 577 GNISEAARRLGVSRNLIYRSLKR 599
            +++  A +LGVSRN +YR L++
Sbjct: 607 WHMTHTAEQLGVSRNTLYRKLRK 629