Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 629 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. DMC3

 Score =  281 bits (719), Expect = 6e-80
 Identities = 187/553 (33%), Positives = 285/553 (51%), Gaps = 45/553 (8%)

Query: 69  LILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQ 128
           ++L+DA G  +                L  G  W EEH+GTN +GT L  ++ +++  ++
Sbjct: 93  VLLTDARGVAIDSVFNEAERGEFQRSGLWLGSVWSEEHEGTNGVGTCLVERQHVTIRRDE 152

Query: 129 HFCRPHRFMSCTASPIFSPSGELIGALDITSER----LKHNQQTLLLISSLAQQVETALL 184
           HF   H  ++C+ASPIF  SGEL+  L+++S R    L+   + + L +  A+ +E+   
Sbjct: 153 HFRGQHVGLTCSASPIFDASGELLAVLNLSSVREDSSLEQRFKAMALTNLSARLIESCFF 212

Query: 185 CSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLG-------GASPGM 237
                 R+ +        +    +G+L  D+  R+  +N  A   LG       G S  M
Sbjct: 213 LGHDPQRYLLRFHPDAGFVGLLGEGLLSFDESARICSVNAAALDLLGLSREQMVGQSLTM 272

Query: 238 QLG---ELLGDDWRAQQAQCLRGELHLATSAIGEGALWIQTNKAS-SLHGVKPLR----- 288
            L    E L D   AQ   C    + LA   +  G L      A  +L  V P++     
Sbjct: 273 LLETPMEQLLDQASAQAHVCW--PMRLADGRLFYGQLREPIRSAPLTLAPVPPIKDERVC 330

Query: 289 FHDPQLETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGE-LVAVNCAALP 347
             D +L+  + +A +V+ R +P+ +QGETG GKE F   L++ S   G+  VA+NCAA+P
Sbjct: 331 LEDSRLQRGFARALRVLERDVPVFLQGETGTGKEAFAAALHRASSRAGQPFVAINCAAIP 390

Query: 348 TELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQERE 407
             LIE+ELFGY+GG+FTGA + G +GK+ QA GG LFLDEIG++PLA Q RLLRVL+ER+
Sbjct: 391 ETLIESELFGYRGGSFTGARKDGMVGKLEQAHGGILFLDEIGDMPLALQTRLLRVLEERQ 450

Query: 408 VTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRL 467
           V P+G      +D+++++A+H +L   V DGR REDL++R+ G  V LPPLR+R+DK RL
Sbjct: 451 VVPLGSATPRPLDVRLISASHQNLPACVADGRLREDLFYRIGGFAVELPPLRERSDKGRL 510

Query: 468 IHKLHRQYRVNPPGDEQRLCPQLLALLEAYAWPGNLRELDNLMQ-VACLMAEGERELSQA 526
           +  L R+      G   RL   +   L A  WPGN+R+L   ++ +  L  EG   L   
Sbjct: 511 LDLLLRE---EAAGATVRLQAGVRERLLAQPWPGNVRQLRTCLRTLVALAVEGRVTLEDV 567

Query: 527 HLSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRL 586
           H                   +   S     +  L       + + +     +++  ARRL
Sbjct: 568 H------------------ELLPASDDQPVDDPLGVSERQTLLSMIEAEHWHVARVARRL 609

Query: 587 GVSRNLIYRSLKR 599
           G+SRN +YR L++
Sbjct: 610 GISRNTLYRKLRQ 622