Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 722 a.a., 3'-to-5' exoribonuclease RNase R from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  612 bits (1578), Expect = e-179
 Identities = 332/711 (46%), Positives = 450/711 (63%), Gaps = 35/711 (4%)

Query: 120 HGDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIA 179
           H D+V A+   +DR+GR + R+  ++    + ++GR   ++G+  V  +DKR   ++LI 
Sbjct: 3   HKDRVKARIVRLDRKGRPEGRVTEIVERSDSPIIGRLLQESGVWLVAPEDKRYGQDVLIP 62

Query: 180 NEDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSA 239
                 A+ G VVV++LT  P  Y +  G+V EVLG+   PGMEIEIA+R Y +PH++S 
Sbjct: 63  KGATGSAKPGQVVVVQLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSD 122

Query: 240 VIEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKR---GGGWRLW 296
               + R +PD+V   D + RVDLR++PLVTIDGEDARDFDDAVY E  +   G GWRL 
Sbjct: 123 AALAQARALPDHVRAADHKHRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKGKGWRLL 182

Query: 297 VAIADVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAE 356
           VAIADVSHYV T S +D +A  R  SVYFP +VIPMLPEKLSNGLCSLNPGV+RLCMV +
Sbjct: 183 VAIADVSHYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMVCD 242

Query: 357 MTISAKGGLSGYKFYPAVMHSHARFTYTQVAAMLEG--GEVKDEHKALFPHLKVLQELYL 414
           M ++AKG +  Y+FYPAVM SHARFTYT+VAA+L+   G    + KAL P+L  L ++Y 
Sbjct: 243 MLVNAKGEVHAYQFYPAVMFSHARFTYTEVAAILQNTRGPEAAQRKALVPYLLNLHDVYR 302

Query: 415 CLDEQRAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVI 474
            L   R ERGA+ FET ETQ + +E  +I++IVPR RN AHK+IEE M+ ANV +A F+ 
Sbjct: 303 ALLAARGERGAVDFETTETQIVCDESGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIQ 362

Query: 475 KHKGHVLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELI 534
           + K   L+RVHE P+ +K    +++L   G+S T G  P+P D+ A+      RP+A+ I
Sbjct: 363 QGKHTGLFRVHEGPTPEKQEILRNYLKAMGVSQTIGDNPKPGDFQAIANATKDRPEAQQI 422

Query: 535 QVMLLRSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKER----- 589
             MLLRSM+QA+YTP N GHFGLA EAY+HFTSPIRRYPDL++HRVI+ +LA++R     
Sbjct: 423 HTMLLRSMQQAIYTPVNSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILARKRYELPN 482

Query: 590 ----GEASEKWTAD---------GGYHYQLEELDLL-----GEECSNTERRADEATRDVS 631
               GEA  K +            G   +    D L     G  CS  ERRADEA+RDV 
Sbjct: 483 LPTPGEAHAKLSKRLASRVRPPVAGEPVKKPSADTLAWQAAGLHCSANERRADEASRDVE 542

Query: 632 DWLKCEFMQDHVGDSFSGVIASVTSFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRL 691
            WLKC++M++H+G+ FSGV+ +VTSFGLFV LD ++++GLVHI+ LG +YF++D  RQ L
Sbjct: 543 AWLKCKYMREHLGEEFSGVVTAVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQEL 602

Query: 692 IGENSGQIYQIGDPVAVKVASVNLDDRQIDLQMEGERPGRKKAGKKPTTARDRANLEGAR 751
            GE +G  Y +G  V V+V+ V+LD R+ID ++  +              RD+  +  A 
Sbjct: 603 RGERTGIRYALGTRVKVQVSRVDLDGRRIDFRLVSDNDDLVL-----RAMRDKTGMSPAS 657

Query: 752 TGNGKPGKGGSVRSQLAGGKLGGSETKKRDAKAKDGKKPKKAAEAKPKAAK 802
                P + G  R   + G   G   +    + K     +KAA  K K A+
Sbjct: 658 DNQAPPARAGKARRSRSEGAPQGRHAQVPPMEVK--AAVRKAAGKKDKGAR 706