Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 804 a.a., ribonuclease R from Kangiella aquimarina DSM 16071

 Score =  808 bits (2088), Expect = 0.0
 Identities = 422/808 (52%), Positives = 555/808 (68%), Gaps = 14/808 (1%)

Query: 4   DPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAME 63
           DP  E E ++Y NPI SR+FIL  L     P   D +A+ L++ + E++EAL++RL AME
Sbjct: 8   DPQAELEAQRYQNPIASRQFILRQLEEANEPVSLDQLAKRLEMKEPEQVEALQKRLNAME 67

Query: 64  RDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFHGDK 123
           RDG+L+  R   Y L +  DL+ G VL H+DG+G+   + GGDD +++ R+MQ  FHGDK
Sbjct: 68  RDGQLICNRKGRYCLVDATDLVRGKVLAHRDGYGYLALEKGGDDWYLSPREMQTVFHGDK 127

Query: 124 VLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIANEDK 183
           VLA+   VDRRGR +  IV +L   ++ +VGR + + GM FV ++D RI H+++IA +D 
Sbjct: 128 VLARVRNVDRRGRTEGAIVEILDGSTSHIVGRLHEENGMKFVTSEDPRILHDLIIAPDDC 187

Query: 184 NGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAVIEK 243
             A  G VVV ++ +RP R   A G +TEVLG  ++ GMEIEIA+RN+ +PH+W   +  
Sbjct: 188 MNAEIGQVVVAQIVQRPKRNQHARGIITEVLGDYLSAGMEIEIAIRNHQIPHEWPDDVLS 247

Query: 244 KLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIADVS 303
           ++  +P  V+++D +GRVDLR+LPLVTIDGEDARDFDDAVY  RK  GGW LWVAIADVS
Sbjct: 248 EVGELPVDVSEKDWQGRVDLRQLPLVTIDGEDARDFDDAVYCRRKAKGGWTLWVAIADVS 307

Query: 304 HYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTISAKG 363
           HYVR  SALD+EA  RGNSVYFP  V+PMLPE LSNGLCSL P VDRLCMVAEM+++A G
Sbjct: 308 HYVRPGSALDQEALERGNSVYFPEFVVPMLPELLSNGLCSLKPKVDRLCMVAEMSLTATG 367

Query: 364 GLSGYKFYPAVMHSHARFTYTQVAAMLEGGE-VKDEHKALFPHLKVLQELYLCLDEQRAE 422
            ++  KFYPAVMHSHARFTY +V  +L G E ++ E+  L   LK L EL+    + +  
Sbjct: 368 QVTASKFYPAVMHSHARFTYDKVWGILSGDEALQKEYAPLVGDLKELHELFKARLKLKEA 427

Query: 423 RGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHVLY 482
           RGAI FET ETQ IF+E +KI++IV R RN AHKIIEECMI ANVAAA+F+ K++   +Y
Sbjct: 428 RGAIEFETTETQIIFDENKKIEKIVGRVRNDAHKIIEECMICANVAAAEFIEKYEKPGVY 487

Query: 483 RVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLLRSM 542
           RVHE PSE++L +F+ FL E G+ + GG  PEP  Y  L   +A RPD ELIQ M+LRSM
Sbjct: 488 RVHEGPSEERLEKFRAFLGELGIFLFGGSTPEPRHYRELHDAIAERPDQELIQTMMLRSM 547

Query: 543 RQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASEKWTADGGY 602
            QAVY+PDN+GHFGLA ++Y+HFTSPIRRYPDL++HR+I+ +LA+E   A      DGG 
Sbjct: 548 MQAVYSPDNQGHFGLAFDSYTHFTSPIRRYPDLLVHRIIKSILAREFDMAG----TDGGL 603

Query: 603 HYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASVTSFGLFVR 662
            Y+ +EL    E  S TERRAD ATRDV DWLKCE+M   VG+ + G I+SVTSFG+FV 
Sbjct: 604 GYEEKELVTFTEHSSMTERRADLATRDVVDWLKCEYMLTRVGEEYWGTISSVTSFGIFVA 663

Query: 663 LDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASVNLDDRQIDL 722
           LDELF++GL+HIS LG DY+ +D  + RLIGE+  Q Y++GD V +KVA+V+++ R ID 
Sbjct: 664 LDELFVEGLIHISELGDDYYHFDALKMRLIGEHKRQSYRVGDRVKIKVANVDMEQRNIDF 723

Query: 723 QM-EGERPGRKK-AGKKPTTARDRANLEGARTGNGKPGKGGSVRSQLAGGKLGGSETKKR 780
            + E E   R++  G++      +A   G+ +G+GK GK G  R     G   G      
Sbjct: 724 ALIEREYVKREEPKGQERKKLYAKAKKSGSLSGDGKKGKDGKKRRDYRKGASKG------ 777

Query: 781 DAKAKDGKKPKKAAEAKPKAAKRVKRKK 808
            AK + G   K A   KPK  K  K+K+
Sbjct: 778 -AKPESGSAKKGAKNTKPKRGKNGKKKR 804