Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 813 a.a., exoribonuclease R, RNase R from Escherichia coli BL21

 Score =  922 bits (2384), Expect = 0.0
 Identities = 462/809 (57%), Positives = 590/809 (72%), Gaps = 5/809 (0%)

Query: 1   MINDPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLR 60
           M  DP  ERE EKY NPIPSREFILE+L  +  P  RD +A  L I  EE+LE LRRRLR
Sbjct: 1   MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60

Query: 61  AMERDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFH 120
           AMERDG+LVFTR QCY LPER+DL+ GTV+GH+DG+GF R +   DDL+++   M+   H
Sbjct: 61  AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120

Query: 121 GDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIAN 180
           GD+VLAQ  G DR+GRR+ARIVR+L  +++ +VGR++ +AG+ FVV DD R+  +ILI  
Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180

Query: 181 EDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV 240
           +   GAR G VVV+ELT+RP R  +A GK+ EVLG  M  GM ++IALR +++P+ W   
Sbjct: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240

Query: 241 IEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIA 300
           +E+++  + + V +E K GRVDLR+LPLVTIDGEDARDFDDAVY E+KRGGGWRLWVAIA
Sbjct: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300

Query: 301 DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS 360
           DVS+YVR  + LD+EAR RG SVYFPSQVIPMLPE LSNGLCSLNP VDRLCMV EMT+S
Sbjct: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360

Query: 361 AKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGG-EVKDEHKALFPHLKVLQELYLCLDEQ 419
           +KG L+GYKFY AVM SHAR TYT+V  +L+G  ++++++  L  HL+ L  LY  LD+ 
Sbjct: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420

Query: 420 RAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGH 479
           R ERG I+FE+ E +FIFN +R+I+RI    RN AHK+IEECMILAN++AA+FV K K  
Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480

Query: 480 VLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLL 539
            L+R+H+KPS + +T F+  LAE GL + GG +PEP DY  L+  +A RPDAE++Q MLL
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540

Query: 540 RSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASEKWTAD 599
           RSM+QA+Y P+N GHFGLAL++Y+HFTSPIRRYPDL LHR I+YLLAKE+G      T  
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT-TET 599

Query: 600 GGYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASVTSFGL 659
           GGYHY +EE+  LG+ CS  ERRADEATRDV+DWLKC+FM D VG+ F GVI+SVT FG 
Sbjct: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659

Query: 660 FVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASVNLDDRQ 719
           FVRLD+LFIDGLVH+SSL +DY+++D   QRL+GE+SGQ Y++GD V V+V +VN+D+R+
Sbjct: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719

Query: 720 IDLQMEGERPGRKKAGKKPTTARDRANLEGARTGNGKPGKGGSVRSQLAGGKLGGSETKK 779
           ID  +       +  GK   TAR++A    A    GK  + G   +        G +  K
Sbjct: 720 IDFSLISSERAPRNVGK---TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTK 776

Query: 780 RDAKAKDGKKPKKAAEAKPKAAKRVKRKK 808
             A  KD +K KK +    K A   K K+
Sbjct: 777 PKAAKKDARKAKKPSAKTQKIAAATKAKR 805