Pairwise Alignments

Query, 293 a.a., membrane protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 297 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score = 79.0 bits (193), Expect = 1e-19
 Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 10/276 (3%)

Query: 7   GLLELHSAVLLFGGTALFSKLIPLGALDITVYRCAIAALVLALIVKATRHSLRLG--NKR 64
           G LE+ +A+L+ G    F  +     LD+  +RC   A  L L+V A    LR G   + 
Sbjct: 8   GSLEMTAAMLISGTIGWFVLVSGQPVLDVVFWRCVFGAGTL-LLVCAAFGFLRPGMLTRT 66

Query: 65  DYGIALALGVIVSLHWVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPLINGTRPHLRDLV 124
            + +A+  G+ +  +W+  FAS   +S+AIG   +   P M V +  L  G +  L+ L 
Sbjct: 67  TFLLAVLSGMAIVGNWLLLFASYSRASIAIGTAVYNVQPFMLVGLAALFLGEKITLQKLF 126

Query: 125 CGVAVLTGVALLIP----EASLGNDITLGILVGVLSAALFTARNLLHKRYFAQYTGPQAM 180
                  G+  ++     +   GND  +GI + + +A L+    L+ KR     T P  +
Sbjct: 127 WLAISFMGMLAIVSAHGTQGEEGNDYLMGIALALGAAFLYAIAALIIKRLTG--TPPHLI 184

Query: 181 -FYQTLVAVLFLGSFVESTPPEVTSDVWQLLILLGVIFTATPHALFTSALRHLSAKTVGL 239
              Q    VL L  F          D W  L+ LG++ T   + L   A++ L     G 
Sbjct: 185 ALIQVCTGVLLLAPFAHFDALPQGVDAWASLLTLGIVHTGLMYVLLYGAIQKLPTALTGA 244

Query: 240 VSCLQPFYGTVLALLLLGETVNLSTLLGGLLVVSTA 275
           +S + P     +     G  + L   +G   ++  A
Sbjct: 245 LSFIYPIAAIFVDWFAFGHRLELLQWIGVAAILLAA 280



 Score = 26.2 bits (56), Expect = 0.001
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 70  LALGVI-VSLHWVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPLINGTRPHLRDLVCGVA 128
           L LG++   L +V  + ++Q    A+     F YP+  + V+    G R  L   +   A
Sbjct: 216 LTLGIVHTGLMYVLLYGAIQKLPTALTGALSFIYPIAAIFVDWFAFGHRLELLQWIGVAA 275

Query: 129 VLTGVA 134
           +L   A
Sbjct: 276 ILLAAA 281