Pairwise Alignments

Query, 293 a.a., membrane protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 297 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  143 bits (361), Expect = 4e-39
 Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 1/284 (0%)

Query: 11  LHSAVLLFGGTALFSKLIPLGALDITVYRCAIAALVLALIVK-ATRHSLRLGNKRDYGIA 69
           LH   L+FG T +F KL       I   R A A L LA   + A++H  +     D+   
Sbjct: 10  LHIGALMFGLTGVFGKLAAASPAVIVFGRAAFAVLALAFFARFASQHGWQKLQAVDWRRL 69

Query: 70  LALGVIVSLHWVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPLINGTRPHLRDLVCGVAV 129
              GV+++ HWV++F S++++ VAI  + F ++P  TV++E LI   R    ++V  V V
Sbjct: 70  ALSGVLLAGHWVSFFVSVKIAGVAIATLGFASFPAFTVILEGLIFRERIRPNEIVLVVLV 129

Query: 130 LTGVALLIPEASLGNDITLGILVGVLSAALFTARNLLHKRYFAQYTGPQAMFYQTLVAVL 189
             G+ L+ P   LG+  T+G+L  VLS  LF+  +L ++    +    QA   Q +V  L
Sbjct: 130 SIGLVLVTPAFDLGSGATVGLLWAVLSGLLFSLLSLTNRASSGRIPAVQAALCQNVVVAL 189

Query: 190 FLGSFVESTPPEVTSDVWQLLILLGVIFTATPHALFTSALRHLSAKTVGLVSCLQPFYGT 249
            L         +V +  W  + LLGV  T   H+LF ++L  + A+T  +V  ++P YG 
Sbjct: 190 CLLPVAAPQLSQVRALDWLWIALLGVFCTGVAHSLFVASLAVIKARTAAVVFAMEPVYGI 249

Query: 250 VLALLLLGETVNLSTLLGGLLVVSTAVYETAQSHRQQRQKKALD 293
            +A LL  ET  L  L+GG L++   V     S    ++  A +
Sbjct: 250 TIAWLLFSETPTLRMLIGGALIIVAIVVSARMSGSADKKTVAAE 293