Pairwise Alignments

Query, 293 a.a., membrane protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 309 a.a., putative amino-acid metabolite efflux pump from Alteromonas macleodii MIT1002

 Score = 68.2 bits (165), Expect = 2e-16
 Identities = 75/288 (26%), Positives = 131/288 (45%), Gaps = 25/288 (8%)

Query: 5   SSGLLELHSAVLLFG----GTALFSKLIPLGALDITVYRCAIAALVLALIVKATRHSLRL 60
           S G+  L  AVL  G    G  L  +++  G + +   R  ++  VLAL V  T+  L +
Sbjct: 12  SKGIKMLLVAVLCLGLNWPGMKLGLEIV--GPVWMVCLRFLLSLPVLALFVLITKKHLPV 69

Query: 61  GNKRDYGIALALGV---IVSLHWVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPLINGTR 117
            N++D  +   +     I+S+  +T   S+Q        I  +T P+  +L++ L    R
Sbjct: 70  LNRKDRSVVFVVAFFQFILSMGLIT--VSLQFIPAGTASILIYTTPLWMLLIDTLWYRQR 127

Query: 118 PHLRDLVC-GVAVLTGVALLIPEASLGNDITL-GILVGVLSAALFTARNLLHKRYFAQYT 175
           P  + L+  G++ +    +L      G  + L G+L+     A+   R   HK     + 
Sbjct: 128 PPSKRLILTGISTIGCAMILFASGQPGAWLPLFGMLLASALWAVAIRRVSFHK-----WK 182

Query: 176 GP--QAMFYQTLVA---VLFLGSFVESTPPEVTSDV--WQLLILLGVIFTATPHALFTSA 228
           G   +A+F+Q  +A   +L +   VE TP   T D+  W LL  +G + T     L  +A
Sbjct: 183 GSVIEAVFWQFTIAGFAMLAIALLVEPTPNFGTYDISDWLLLAYIGPVATGLGFGLMVAA 242

Query: 229 LRHLSAKTVGLVSCLQPFYGTVLALLLLGETVNLSTLLGGLLVVSTAV 276
              L    + L+S L P  G V +++LL ET+    + G +L+++  +
Sbjct: 243 GPKLPPDKIVLISTLTPIVGYVSSVILLKETLLPMVMAGAILMIAALI 290