Pairwise Alignments

Query, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  511 bits (1317), Expect = e-148
 Identities = 324/779 (41%), Positives = 446/779 (57%), Gaps = 35/779 (4%)

Query: 895  ELAQSEAHFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADLMH--- 951
            +LA++E   R +  +   GI  L   G +   N      LG   D +  K L  L H   
Sbjct: 467  QLAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAGARMLGYGLDEIVGKPLHALAHHTY 526

Query: 952  PEDRALATGLYQALAESEQGSISGE-----WRMLDGDGELMWMAVIASVLEEGDGGERSV 1006
            P+              S+ G    E     WR    DG    +    + + + DG     
Sbjct: 527  PDGTPFPRECCSMFLTSQDGQPRTEVDEVLWRK---DGTSFPVEYSTTPVLK-DGTVVGT 582

Query: 1007 VMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTE 1066
            V++  +IT  K     L  A + A+AA+QAK+DFLANMSHEIRTPMNAIIGMS L L+TE
Sbjct: 583  VVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTE 642

Query: 1067 LDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVK 1126
            L+ +QR+YV KI+++ + LLGIINDILDFSKIEAGKL +E     LDT+L+++ ++ S K
Sbjct: 643  LNPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEK 702

Query: 1127 AADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARD-ED 1185
               K LEL+F VA  VP  + GDPLRL Q+LIN  NNA+KFTE GE+++++  LA D  +
Sbjct: 703  TIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTETGEIVVAV-RLAEDLGE 761

Query: 1186 QVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIG 1245
             V+L+F VRD+GIGL+AEQ  +LF+SF QADTSTTRKYGGTGLGLAI ++L ELM GE+G
Sbjct: 762  AVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVG 821

Query: 1246 VDSQFGNGSTFYFTVSV-KVAQNAQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFS 1304
            V+SQ G GSTF+FT  + K      L  + +L G  +LVVDDN  AR +L   L SM F 
Sbjct: 822  VESQPGRGSTFWFTACLGKGRPRRALVPKPDLRGRHMLVVDDNENARAVLVDMLTSMSFR 881

Query: 1305 VDSARSGMEALEKCAE----RDYRIALIDWKMPEMDGTETAARM--RELKQPPLILMVSA 1358
            V++  SG  A+ +  E    + + +  +DW+MP MDG ETA  +    L  PP ++MV+A
Sbjct: 882  VEAVESGAAAVARVREVAGAKPFEVVFLDWQMPGMDGIETARAILGLGLTSPPHMIMVTA 941

Query: 1359 HANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGR--QGHKPVRRKAQPMDAQKLSG 1416
            H   E +   E  GI   + KP++ S + D +M ALG   +G        + +    L+ 
Sbjct: 942  HGREEVMKAAESAGIEDVLIKPVNPSIMFDAVMRALGAALEGDPEEAAAGREVSDDALAS 1001

Query: 1417 LKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVM 1476
            L+G R+LL EDN+ NQ+VA+E L   GV + +A+NG+IA++ +    +D+VLMD QMPVM
Sbjct: 1002 LRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVMAAPYDMVLMDMQMPVM 1061

Query: 1477 DGYQATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQY 1536
            DG  ATRE+R+L G  +LPV+AMTANAM  D++ C  AGMND++ KPI+   L+  LL++
Sbjct: 1062 DGVAATREIRRL-GFGDLPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDELFACLLKW 1120

Query: 1537 --LCPEAKGLESADADAAADQEVTSLTSWPEHEDLDIDRGLQLVQNSERLYRRILERFVT 1594
              + P A    +A A A        L    + +  D +R   + +      R IL  F+ 
Sbjct: 1121 RGVAPTAVVAPAAPAGA------VPLLPEIDPDVFDFERMGPIYKWDMARLRPILAAFLD 1174

Query: 1595 SQAQAGKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQGEACEA 1653
                AG K+ +  A         +AH LKG A    A  L   A  +E     G    A
Sbjct: 1175 ---DAGTKVARLEAETDLAALREVAHGLKGTANTAGALRLGRLAADVENSARDGNDAAA 1230



 Score = 31.2 bits (69), Expect = 8e-04
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 617 QRQVAASIRDLTEQLAVERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSDNITEL 676
           +RQVAA   +L    A+  Q+ E+E R R ++ ++   +     +GT  M +V+     +
Sbjct: 451 ERQVAARKEELE---AINGQLAEAEERSRLILGSVDEGICGLAQDGT--MSFVNPAGARM 505

Query: 677 TGYPAWHFIESKKRSFGSLILDEDA---ERCDAIISGALAEQHAFEVEYRIRHRDGSLRW 733
            GY     +     +       +       C ++   +   Q   EV+  +  +DG+   
Sbjct: 506 LGYGLDEIVGKPLHALAHHTYPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWRKDGTSFP 565

Query: 734 VHEKGKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITES 781
           V E       +DG  V    +  DITE K A   + Q+ ++ E  +++
Sbjct: 566 V-EYSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQA 612