Pairwise Alignments

Query, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella amazonensis SB2B

Subject, 572 a.a., single-stranded-DNA-specific exonuclease RecJ from Erwinia amylovora T8

 Score =  640 bits (1652), Expect = 0.0
 Identities = 332/572 (58%), Positives = 424/572 (74%), Gaps = 8/572 (1%)

Query: 2   KYKLTRRETVDDSHLPNHLHPLIKQLLARRGVAGDDCEQEL-SRLLRP-ETMLGLDRAAC 59
           K +L RRE  D + LP  LHPL+++L A RGV+   CE E  +R L P +++ G+D+A  
Sbjct: 4   KTELRRREAADVAALPADLHPLLRRLYAHRGVSRA-CELERGARNLHPFQSLSGIDQAVT 62

Query: 60  LLADAAMASKRMLIVGDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLV 119
           +L  A + +  ++IVGDFDADGATST++ +L+L+ +G     +L+PNRFD GYGLS  +V
Sbjct: 63  ILQKALLDNLCIMIVGDFDADGATSTALTVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVV 122

Query: 120 ALAVEKGAEVLITVDNGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGC 179
             A  +GA++++TVDNGISS+ GVA A   G+ V++TDHHLPG++LPDADAIVNPN   C
Sbjct: 123 EQAAVRGAQLIVTVDNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLSDC 182

Query: 180 TFASKSIAGVGVAFYLMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDA 239
            F S+++AGVGVAFYLMLALRA LR  G         PNLA L+D+VALGTVADVV LDA
Sbjct: 183 AFPSRALAGVGVAFYLMLALRARLRDDGVNTL-----PNLAELLDLVALGTVADVVPLDA 237

Query: 240 NNRILVDAGLKRVRAGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSL 299
           NNRILV  GL R+RAG+CRPGI ALLE+A R+  +  A+D GF +GPRLNAAGRLD+MS+
Sbjct: 238 NNRILVWQGLSRIRAGKCRPGIRALLEIANRDARQLAASDLGFTLGPRLNAAGRLDDMSV 297

Query: 300 GVETLLCDDIMYARRMAAELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQ 359
           GV  LL +D+  AR +A+ELD LNQ R+E+E GMQ+EAL    RL+     LP GIA+Y 
Sbjct: 298 GVALLLSEDLAQARMLASELDALNQTRKEIEQGMQSEALTLCNRLESASEALPLGIAMYH 357

Query: 360 DDWHQGVIGILASRIKDKYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGL 419
            +WHQGV+GILASR+K+++HRPVIAFA A D  +KGS RSI GLHMRD+LE + + HPGL
Sbjct: 358 PEWHQGVVGILASRLKERFHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTLHPGL 417

Query: 420 IPKFGGHAMAAGLSLAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETA 479
           I KFGGHAMAAGLSL +A   +F+  F D V + L  E L G + SDGEL  + LTL TA
Sbjct: 418 IVKFGGHAMAAGLSLQEAKFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTA 477

Query: 480 NLIRASGPWGQGFEEPLFDGHFRLLQQRLVGEKHLKMMVETECGRLMLDAIAFNVDLKLW 539
            L+R +GPWGQ F EP FDG F+LLQQRLVGE+HLK+MVE   G  +LD IAFNVD  LW
Sbjct: 478 ELLRDAGPWGQAFPEPTFDGKFKLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTALW 537

Query: 540 PDATVRHVHLAYRLDVNEFRGNQSLQLLVEQI 571
           PD  V+ V LAY+LDVNE+RGN+++QL+++ +
Sbjct: 538 PDPAVKQVELAYKLDVNEYRGNRNVQLIIDHL 569