Pairwise Alignments

Query, 1058 a.a., L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) from Shewanella amazonensis SB2B

Subject, 1320 a.a., trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase from Escherichia coli ECRC98

 Score =  877 bits (2267), Expect = 0.0
 Identities = 489/1004 (48%), Positives = 635/1004 (63%), Gaps = 42/1004 (4%)

Query: 57   AHDLVAKVRQYEKKGLMVG-IDAFLQQYSLETQEGIILMCLAEALLRIPDAETADALIAD 115
            A+ L  K+R  +      G +   LQ++SL +QEG+ LMCLAEALLRIPD  T DALI D
Sbjct: 128  AYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRD 187

Query: 116  KLSGAKWDEHMSKSDSVLVNASTWGLMLTGKIVQLDKNLDGTPSNLLSRLVNRLGEPVIR 175
            K+S   W  H+ +S S+ VNA+TWGL+ TGK+V      + + S  L+R++ + GEP+IR
Sbjct: 188  KISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHN--EASLSRSLNRIIGKSGEPLIR 245

Query: 176  QAMYAAMKIMGKQFVLGRTIEEGLKNAAEKRKLGYTHSYDMLGEAALTMKDADKYYRDYA 235
            + +  AM++MG+QFV G TI E L NA +  + G+ +SYDMLGEAALT  DA  Y   Y 
Sbjct: 246  KGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQ 305

Query: 236  NAIQALGTAKFDESEAPRPTISIKLSALHPRYEVANEDRVMTELYATLIKLIEQARSLNV 295
             AI A+G A         P ISIKLSALHPRY  A  DRVM ELY  L  L   AR  ++
Sbjct: 306  QAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDI 365

Query: 296  GIQIDAEEVDRLELSLKLFKKLYQSDAAKGWGLLGIVVQAYSKRALPVLMWLTRLAKEQG 355
            GI IDAEE DRLE+SL L +KL       GW  +G V+QAY KR   V+ +L  LA    
Sbjct: 366  GINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSR 425

Query: 356  DEIPLRLVKGAYWDSELKWAQQAGEAGYPLFTRKAATDVSYLACARYLLSEATRGVIYPQ 415
              + +RLVKGAYWDSE+K AQ  G  GYP++TRK  TDVSYLACA+ LL  A   +IYPQ
Sbjct: 426  RRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLL--AVPNLIYPQ 483

Query: 416  FASHNAQTVAAITAMVGDR----KFEFQRLHGMGQELYDTVLAEAAVPTV----RIYAPI 467
            FA+HNA T+AAI  + G      ++EFQ LHGMG+ LY+ V  + A   +    RIYAP+
Sbjct: 484  FATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPV 543

Query: 468  GAHKDLLPYLVRRLLENGANTSFVHKLVDPKTPIESLVTHPLKTL------QGYKTLANN 521
            G H+ LL YLVRRLLENGANTSFV+++ D   P++ LV  P+  +      +G   L + 
Sbjct: 544  GTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHP 603

Query: 522  KIVKPADIFGAERKNSKGLNMNIISESEPFFAALEKFKDTQWSAGPLVNGETLSGEVRDV 581
            KI  P D++G  R NS GL++          +AL      +W A P++     +GE+  V
Sbjct: 604  KIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPV 663

Query: 582  VSPYNTTLKVGQVAFANEATIEQAIAGADKAFASWCRTPVETRANALQKLADLLEENREE 641
            ++P      VG V  A    +EQA+  A      W  TP   RA  L + A L+E   ++
Sbjct: 664  INPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQ 723

Query: 642  LIALCTREAGKSIQDGIDEVREAVDFCRYYAVQAKKMMSKPELLPGPTGELNELFLQGRG 701
            LI +  REAGK+  + I EVREAVDF  YYA Q +   +     P              G
Sbjct: 724  LIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRP-------------LG 770

Query: 702  VFVCISPWNFPLAIFLGQVAAALATGNTVIAKPAEQTCLIGFRAVQLAHEAGIPKDVLQF 761
              VCISPWNFPLAIF GQ+AAALA GN+V+AKPAEQT LI  + + +  EAG+P  V+Q 
Sbjct: 771  PVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQL 830

Query: 762  LPGTGAVVGAKLTSDERIGGVCFTGSTTTAKVINRALAGR---DGAIIPLIAETGGQNAM 818
            LPG G  VGA+LT D+R+ GV FTGST  A ++ R +A R    G  IPLIAETGG NAM
Sbjct: 831  LPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAM 890

Query: 819  VVDSTSQPEQVVNDVVSSAFTSAGQRCSALRVLYLQEDIAERVLDVLKGAMDELTLGNPG 878
            +VDS++  EQVV DV++SAF SAGQRCSALRVL LQ++IA+  L +L+GAM E  +GNPG
Sbjct: 891  IVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPG 950

Query: 879  SVKTDVGPVIDAAAKANLNAHIDHIKQVGRLIHQLSLPEGTE------NGHFVAPTAVEI 932
             + TD+GPVID+ AKAN+  HI  ++  GR + Q ++ E +E      +G FVAPT +E+
Sbjct: 951  RLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQ-AVRENSEDAREWQSGTFVAPTLIEL 1009

Query: 933  DSIKVLTKENFGPILHVVRYKAAGLQKVIDDINSTGFGLTLGIHSRNEGHALEVADKVNV 992
            D    L KE FGP+LHVVRY    L ++I+ IN++G+GLTLG+H+R +    +V    +V
Sbjct: 1010 DDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHV 1069

Query: 993  GNVYINRNQIGAVVGVQPFGGQGLSGTGPKAGGPHYLTRFVTEK 1036
            GN+Y+NRN +GAVVGVQPFGG+GLSGTGPKAGGP YL R +  +
Sbjct: 1070 GNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANR 1113



 Score = 42.0 bits (97), Expect = 3e-07
 Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 52/200 (26%)

Query: 626  NALQKLADLLEENREELIALCTREAGKSIQDGIDEVREAVDFCRYYAVQAKKMMSKPELL 685
            NAL++ A     NR EL ALCT + G+  Q G                          LL
Sbjct: 1144 NALREWA----ANRPELQALCT-QYGELAQAGTQR-----------------------LL 1175

Query: 686  PGPTGELNELFLQGRGVFVCISPWNFPLAIFLGQVAAALATGNTVIAKPAEQTCLIGFRA 745
            PGPTGE N   L  R   +CI+         L Q+AA LA G+ V               
Sbjct: 1176 PGPTGERNTWTLLPRERVLCIADDEQDA---LTQLAAVLAVGSQV--------------- 1217

Query: 746  VQLAHEAGIPKDVLQFLPGTGA----VVGAKLTSDERIGGVCFTGSTTTAKVINRALAGR 801
              L  +  + + +++ LP T +    +  A+  + +    V F G +   + +  A+A R
Sbjct: 1218 --LWPDDALHRQLVKALPSTVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAAR 1275

Query: 802  DGAIIPLIAETGGQNAMVVD 821
            DGAI+ +     G++ ++++
Sbjct: 1276 DGAIVSVQGFARGESNILLE 1295



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 9/53 (16%)

Query: 1003 GAVVGVQPFGGQGLSGTGPKAGGPHYLTRFVTEKTRTNNITAIGGNATLLSLG 1055
            GA+V VQ F  +G S           L R   E++ + N  A GGNA+L+++G
Sbjct: 1277 GAIVSVQGFA-RGESNI--------LLERLYIERSLSVNTAAAGGNASLMTIG 1320