Pairwise Alignments

Query, 378 a.a., polyamine ABC transporter, ATP-binding protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 342 a.a., ABC transporter ATP-binding protein YdcT from Pseudomonas sp. S08-1

 Score =  265 bits (676), Expect = 2e-75
 Identities = 152/354 (42%), Positives = 216/354 (61%), Gaps = 26/354 (7%)

Query: 26  VSKLFDDVRAVDDVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGQDIT 85
           VS++F +V+AVD VS+ I  GE F++LG SGSGK+T LR++AGFE+P+ G I + G++  
Sbjct: 10  VSRVFGEVKAVDRVSIDIRDGEFFSMLGPSGSGKTTCLRLIAGFEQPSAGSIRIHGEEAA 69

Query: 86  DLPPYERPINMMFQSYALFPHMTVEQNIAFGLKQDKMSKADISQRVQEMLKLVHMEQYAK 145
            LPPY+R +N +FQ YALFPHM V +N+A+GLK   ++KA+   R +E L LV +  Y  
Sbjct: 70  GLPPYQRDVNTVFQDYALFPHMNVLENVAYGLKVKGVAKAERLARAEEALALVALGGYGV 129

Query: 146 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRTQMQLEVVEILERVGVTCV 205
           RKP QLSGGQRQRVALAR+L  RP++LLLDEP+GALD KLR QMQ E+ ++  ++G+T +
Sbjct: 130 RKPAQLSGGQRQRVALARALVNRPRVLLLDEPLGALDLKLREQMQSELKKLQRQLGITFI 189

Query: 206 MVTHDQEEAMTMAGRIAIMSDGWIAQVGSPMDIYESPNSRMIAEFIGTVNLFDCEIIEDE 265
            VTHDQ EA++M+ R+A+ + G I QV +P ++Y +P S  +AEF+GT N+   E+ +  
Sbjct: 190 FVTHDQGEALSMSDRVAVFNKGRIEQVDTPRNLYMNPASAFVAEFVGTSNVLKGELAQQ- 248

Query: 266 ADHAILKSPTLPQPFLIGHGVTTSLEDKHVWLAVRPEKTLITREQPEGEYNWARGKVHDI 325
                          L G     S+  +HV L      TL   E   G      G +HDI
Sbjct: 249 ---------------LNGSPRPVSIRPEHVRLC--DGSTLGGDEVAIG------GLLHDI 285

Query: 326 AYLGGLSVYYIKLEDDKIIQCSMTNTE-RRADHPTW-GDDIYISWEATSGVVLR 377
            YLG  + Y ++L++ +    S  N +    D P   G  +   W   + V LR
Sbjct: 286 QYLGAATRYELQLDNGQNFAVSQANNQWGVGDAPCQPGQRVTARWARAAMVALR 339