Pairwise Alignments

Query, 168 a.a., TRAP-type transport system, small permease component (RefSeq) from Shewanella amazonensis SB2B

Subject, 179 a.a., tripartite ATP-independent periplasmic transporter DctQ from Agrobacterium fabrum C58

 Score = 87.8 bits (216), Expect = 9e-23
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 1/162 (0%)

Query: 3   KLIGFFEGITEALGRLVGWFTLGMVLMTLAVVVLRYAFATGATALQETALYLHGAVFTLA 62
           KL    + ++EALG++ G+  L   L++    ++RYA    +    E   Y+   +  + 
Sbjct: 6   KLSALIDLVSEALGKVAGYLVLICCLVSAGNAMVRYALNYSSNGWLEIQWYMFAFIVLIG 65

Query: 63  AGFTLKRDAHVRVDVFYRQCSERTRHWIDFVGTLVFLFPLSLAIGLYSFDYVMNAWRIQE 122
           A +TL+ + HVRVD+ Y   S R+R W+D +G ++FL P    +   S+     +W   E
Sbjct: 66  ASYTLRMNEHVRVDIIYGAISPRSRLWVDIIGIVLFLIPACFYLAWLSWPMFTLSWHQGE 125

Query: 123 SSAEAGGLPWVYLQKSLLLGLCVSLILQGLCELYRHGKALFG 164
            S+ AGGL    ++  +  G  + L+LQG  EL +   AL G
Sbjct: 126 MSSNAGGLIRWPVKLVIFAGFAL-LVLQGFSELIKRVGALNG 166