Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 350 a.a., DNA polymerase IV from Pseudomonas sp. S08-1

 Score =  328 bits (842), Expect = 1e-94
 Identities = 172/338 (50%), Positives = 230/338 (68%), Gaps = 1/338 (0%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASA 60
           MRKIIHID DC++AA+EMRD P+  G+PLAVGG++DRRGV++TCNYEARA+GVRSAM   
Sbjct: 1   MRKIIHIDCDCFYAAIEMRDDPRLAGRPLAVGGAADRRGVVATCNYEARAWGVRSAMPMG 60

Query: 61  YALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSAT 120
            ALKLCP+L +V  RM+ YKAVS++I  IF  YT +IEPLSLDEAYLDVS    ++GSAT
Sbjct: 61  QALKLCPDLQVVRPRMDAYKAVSREIHAIFRDYTEIIEPLSLDEAYLDVSASPHFEGSAT 120

Query: 121 RIAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180
           RIA+ IR  + +E  +T SAGV+P KF+AK+ASD  KPNG +V++PD +  FV AL + K
Sbjct: 121 RIAQDIRRRVSQELHITVSAGVAPNKFLAKIASDWRKPNGLFVITPDQIEEFVAALPVSK 180

Query: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240
           + GVGKVT  K+  LG+ +C D+++  +  L   FG FG  L+  A G DERA+     R
Sbjct: 181 LHGVGKVTASKMERLGIISCLDLREWSKLALAREFGSFGERLWNLARGIDERAVQVDSRR 240

Query: 241 KSVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTI 300
           +SV VE T  +DL    ACL  L  L+ +L+ R+ R  +  R  K  VK+KF DF QTT+
Sbjct: 241 QSVSVENTFNQDLPDLAACLKHLPELLQQLDTRMARLDASYRPDKPFVKIKFHDFSQTTL 300

Query: 301 ESRAEEPSVRLFESLLSQAFVRAEGRGIRLVGIAAGLV 338
           E       +  ++ L+S AF R   + +RL+G+   L+
Sbjct: 301 EQAGARRDLDSYQLLMSAAFARG-NKPVRLLGVGVRLL 337