Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 352 a.a., DNA polymerase IV from Pseudomonas fluorescens SBW25

 Score =  325 bits (832), Expect = 1e-93
 Identities = 172/345 (49%), Positives = 229/345 (66%), Gaps = 1/345 (0%)

Query: 2   RKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASAY 61
           RKIIH+D DC++AA+EMRD P    KPLAVGGS+DRRGVI+TCNYEARA+GVRSAM+S +
Sbjct: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRH 63

Query: 62  ALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSATR 121
           ALKLCP+L +V  RM+ YK  S++I+ IF  YT LIEPLSLDEAYLDVSD   + GSATR
Sbjct: 64  ALKLCPDLTIVKPRMDAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATR 123

Query: 122 IAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGKI 181
           IA+ IR  +  +  +T SAGV+P KF+AK+ASD  KPNG +V++PD +  FV  L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKL 183

Query: 182 PGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRERK 241
            GVGKVT +KL  LG++ C  +++  +  L   FG FG  L+  A G D+R + +   R+
Sbjct: 184 HGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGVDDRVVQNDSRRQ 243

Query: 242 SVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTIE 301
           S+ VE T   DL    +CL  L  L+  L  R+ R  S  R  K  VK+KF DF QTT+E
Sbjct: 244 SISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTLE 303

Query: 302 SRAEEPSVRLFESLLSQAFVRAEGRGIRLVGIAAGLVCRSEAEQE 346
                  +  ++ LL+QAF R  G+ +RL+GI   L+  S   ++
Sbjct: 304 QAGAGRDLESYQQLLTQAFNRG-GKPVRLLGIGVRLLDLSNGNEQ 347