Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 351 a.a., DNA polymerase IV from Escherichia coli ECRC62

 Score =  360 bits (925), Expect = e-104
 Identities = 192/339 (56%), Positives = 236/339 (69%), Gaps = 1/339 (0%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASA 60
           MRKIIH+DMDC+FAAVEMRD P  R  P+A+GGS +RRGVIST NY AR FGVRSAM + 
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60

Query: 61  YALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSAT 120
            ALKLCP+L L+PGR + YK  S  IREIFSRYTS IEPLSLDEAYLDV+D     GSAT
Sbjct: 61  MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120

Query: 121 RIAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180
            IA+ IR  IF E  LTASAGV+P+KF+AK+ASD+NKPNGQ+V++P  +  F++ L L K
Sbjct: 121 LIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180

Query: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240
           IPGVGKV+  KL A+GL+TC DVQ+    +L + FGKFG +L+ER+ G DER + S R R
Sbjct: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240

Query: 241 KSVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTI 300
           KSVGVE T+ +D+H    C  ++  L PEL RRL +      I +  VKLKFDDF+QTT 
Sbjct: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300

Query: 301 ES-RAEEPSVRLFESLLSQAFVRAEGRGIRLVGIAAGLV 338
           E          L  +       R  GRG+RLVG+   L+
Sbjct: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL 339