Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 352 a.a., DNA polymerase IV from Dickeya dadantii 3937

 Score =  365 bits (938), Expect = e-106
 Identities = 200/339 (58%), Positives = 241/339 (71%), Gaps = 1/339 (0%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASA 60
           MRKIIH+DMDC++AA+EMRD P+ R  PLA+GGS+DRRGVI T NY AR +GV SAMA+A
Sbjct: 1   MRKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSADRRGVICTANYPARRYGVHSAMATA 60

Query: 61  YALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSAT 120
            AL+LCP+L L+PGRMEVYKA S QIR+IFSRYTSLIEPLSLDEAYLDV+D     GSAT
Sbjct: 61  TALRLCPHLTLLPGRMEVYKAASYQIRQIFSRYTSLIEPLSLDEAYLDVTDSPHCGGSAT 120

Query: 121 RIAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180
            +A+ IR  IF E  LTASAGV+PIKF+AKVAS+ NKPNGQYV+SP  +  F+ AL L K
Sbjct: 121 LMAQEIRQAIFNELHLTASAGVAPIKFLAKVASEQNKPNGQYVISPAQMEAFLLALPLEK 180

Query: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240
           IPGVGKVT ++L   GL TCADV++   T L   FGKFG +L+ER HG DER +   R R
Sbjct: 181 IPGVGKVTAKRLAECGLHTCADVRRYALTELLREFGKFGRILWERCHGIDERQVSPDRLR 240

Query: 241 KSVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTI 300
           KSVGVE TL +D+H   AC  ++  L  EL  RL R      I +  VKLKFDDFRQTT 
Sbjct: 241 KSVGVEKTLAQDIHDWTACEALIERLYDELELRLRRVRPDLHIARQGVKLKFDDFRQTTQ 300

Query: 301 ESRAEEPSVRLFESLLSQAF-VRAEGRGIRLVGIAAGLV 338
           E      +      L  +++  R E RG+RLVG+   L+
Sbjct: 301 EHVWPVLNKPDLLKLARESWDQRREARGVRLVGLHVSLI 339