Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 357 a.a., DNA polymerase IV from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  276 bits (705), Expect = 8e-79
 Identities = 172/360 (47%), Positives = 225/360 (62%), Gaps = 16/360 (4%)

Query: 2   RKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASAY 61
           RKI+H+DMD +FA+VE RD P  RG+P+AVG ++  RGV++  +YEAR FGVRSAM S  
Sbjct: 7   RKIVHVDMDAFFASVEQRDDPSLRGRPVAVGHAA-ARGVVAAASYEARRFGVRSAMPSTT 65

Query: 62  ALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSATR 121
           A + CP+L+ VP R +VY+AVS QI  IF+ YT LIEPLSLDEAYLDV+      G+A+ 
Sbjct: 66  AQRKCPDLVFVPPRFDVYRAVSAQIHAIFADYTDLIEPLSLDEAYLDVTADRRILGTASA 125

Query: 122 IAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGKI 181
            AE IR  I +ETGLTASAG+S  KF+AK+ASD NKPNGQ+VV+P     FV  L + + 
Sbjct: 126 TAEEIRRRILEETGLTASAGISYNKFLAKLASDQNKPNGQFVVAPGRGEAFVEDLPVRRF 185

Query: 182 PGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRERK 241
            GVG VT  K+  LG++T AD+++ P   L  HFGK G   Y  A G D+R +   R RK
Sbjct: 186 HGVGPVTAAKMEKLGIRTGADLRRQPLAFLQHHFGKSGPWYYAIARGEDDRPVNPDRTRK 245

Query: 242 SVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTIE 301
           S G ETT   DL   EA    + ++  E+        +G R   + VK+K+ DF+Q+T  
Sbjct: 246 SSGSETTFASDLTEPEAIEAGVVAMADEV--WAWCEIAGSRGRTVTVKVKWADFQQSTRS 303

Query: 302 SRAEEPSVRLFESL--LSQAFVRA---EGRGIRLVGIAAGLVCRSEAEQEGSA--QLALS 354
               EP V   E+L  LS+  VR+     RG+RLVG++      S  E  G+A  QLALS
Sbjct: 304 RSLSEP-VASREALRDLSRLLVRSLYPPTRGVRLVGVSL-----SNLETTGAAANQLALS 357