Pairwise Alignments

Query, 517 a.a., proton/peptide symporter family protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 493 a.a., Dipeptide permease D from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  102 bits (255), Expect = 2e-26
 Identities = 107/427 (25%), Positives = 183/427 (42%), Gaps = 47/427 (11%)

Query: 9   PKQIPYIIASEACERFSFYGMRNILTPFLMTALLLSVPEHLRAGEAKDVFHSFVIGVYFF 68
           P+ I Y++A +  E FSFYGMR +L  +L   L  +         A ++F ++   VY  
Sbjct: 8   PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTH------AYELFSAYCSLVYVT 61

Query: 69  PLLGGWIGDRLFGKYNTILWLSLLYCVGHAFLAIFEDSKTGFYTGLFLIALGSGGIKPLV 128
           P+LGG++ D++ G    ++  +LL  +GH  L   E   +  Y  L +I  G G  K  V
Sbjct: 62  PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNV 121

Query: 129 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKHFGAAVAFGIPGVLMFI 188
           S  +G+ ++ ++       F + Y   N GS  A ++     + +  A+ FG+  V M  
Sbjct: 122 SCLLGELYEPTDPR-RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180

Query: 189 ATVFFWAGRHRYVHMPPEPKNPNGFLPVIKTALLSPGANRFGLALALMGTVLAVIALGFM 248
             V F  G   + H     K       +  T  L P    +G  L L+    A+I + F 
Sbjct: 181 GLVIFLCGNRHFTHTRGVNKK-----VLRATNFLLP---NWGWLLVLLVATPALITILFW 232

Query: 249 PSLGLVTSLCLALVLLMGFVGSGASMQLDRARARHGDEAVEGVRAVMRILVLFALVTPFW 308
                V +L +A +     +G G   ++ R +A +  +  E    ++  L  F+++  FW
Sbjct: 233 KEWS-VYALIVATI-----IGLGVLAKIYR-KAENQKQRKE--LGLIVTLTFFSML--FW 281

Query: 309 SLFDQKASTWILQANEMTKPEWF----EPAMMQALNPLLVMILIPFNNFVLYP------T 358
           +   Q  S+  L  +     + F      AM Q++N   VM+   F  +V+        T
Sbjct: 282 AFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRT 341

Query: 359 LERWGFRLTALGKMASGIAFSGLS--WVVIGSIQLMMDGGSAVSIVWQVLPYALLTFGEV 416
           +  WG     LG M++G     LS  W         M G S++ ++  VL  A++ F E+
Sbjct: 342 VRIWGKFALGLGLMSAGFCILTLSARWSA-------MYGHSSLPLM--VLGLAVMGFAEL 392

Query: 417 LVSATGL 423
            +    +
Sbjct: 393 FIDPVAM 399