Pairwise Alignments

Query, 479 a.a., transporter, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 440 a.a., ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) from Pseudomonas simiae WCS417

 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 60/275 (21%), Positives = 109/275 (39%), Gaps = 45/275 (16%)

Query: 40  TLVAETGFWTDYLQTKMLPAFTRQTGIEVKVVSTQLDDMFNLQQASLRMAK--GEFDLLS 97
           TL   T   +D ++ + L         E+K+    L++    Q+ +  +A   G+FD+L+
Sbjct: 29  TLTIATVNNSDMIRMQKLSKTFEAEHPEIKLNWVVLEENVLRQRLTTDIATQGGQFDVLT 88

Query: 98  MEAGWAKEWAANGYTVPLEELAGLYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYN 157
           +    A  W A G+  P+++L   YD          L+  +PS+   LS +G ++A+P+ 
Sbjct: 89  IGMYEAALWGAKGWLEPMKDLPASYD----------LDDVFPSVRDGLSVKGSLYALPFY 138

Query: 158 NYVMGNHFRRDLFENADEQKHFLERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLK 217
                 ++R DLF++A          G  +    T  Q+ + A   T K  +        
Sbjct: 139 AESSITYYRTDLFKDA----------GLTMPEHPTWTQIGEFASKLTDKTKEQ------- 181

Query: 218 QPFYGVALMSGNKPHINDEFSAILW---SMGDRWFTPVYEDNGRLNHFEVSRNLDKKLQV 274
              YG+ L    K    +  + I       G RWF   ++       ++ + N       
Sbjct: 182 ---YGLCLR--GKAGWGENMALITTLANGYGARWFDEKWQPEFNGPEWKDALNF------ 230

Query: 275 ANYYQSIKPFAIPADDAFAFNEAADALANGRVAMW 309
             Y  ++K    P   +  FNE      +G+ A+W
Sbjct: 231 --YVDNMKKSGPPGASSNGFNENLALFNSGKCAIW 263