Pairwise Alignments

Query, 272 a.a., flagellin-like protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 498 a.a., flagellin (NCBI) from Escherichia coli BW25113

 Score =  142 bits (359), Expect = 1e-38
 Identities = 103/301 (34%), Positives = 149/301 (49%), Gaps = 42/301 (13%)

Query: 1   MAITVNTNVTSMKAQKNLTLSNRDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60
           MA  +NTN  S+  Q N+  +   L++S+ERLSSGLRINSAKDDAAG AI+NR  S ++G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLSIQAENGANSADDLTSLKNEMDQLA 120
           L    RNAND IS+AQ  EGA+ E  N LQR+R+L++QA  G NS  DL+S+++E+    
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRL 120

Query: 121 LEITAIGNTTAFGDTKLMTGGFSNGK-KFQVGHQNAEDVTVTVKTNNAGTLSVGALD--- 176
            EI  +   T F    ++     NG  K QVG  + + +T+ +K  +A TL +       
Sbjct: 121 DEIDRVSGQTQFNGVNVLA---KNGSMKIQVGANDNQTITIDLKQIDAKTLGLDGFSVKN 177

Query: 177 ---------VTTSGGRSTAMLKI-------DAAIKSIDTQRASLGAIQ----NRLAHNIS 216
                    VT  G  +T  +K+       +AA  +  T  AS+  +     N     I+
Sbjct: 178 NDTVTTSAPVTAFGATTTNNIKLTGITLSTEAATDTGGTNPASIEGVYTDNGNDYYAKIT 237

Query: 217 NSAN---------------TQANVADAKSRIVDVDFAKETSTMTKNQVLQQTGSAMLAQA 261
              N               T A  A A + + D +  K T+  +    +Q   +A  A A
Sbjct: 238 GGDNDGKYYAVTVANDGTVTMATGATANATVTDANTTKATTITSGGTPVQIDNTAGSATA 297

Query: 262 N 262
           N
Sbjct: 298 N 298



 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 26/203 (12%)

Query: 96  SIQAENGANSADDLTSLK-NEMDQLALEITA-------IGNTTAFGDTKLMT-----GGF 142
           S  A  GA S   L   K N+ D  AL+ T        +  TT     K +T     G  
Sbjct: 294 SATANLGAVSLVKLQDSKGNDTDTYALKDTNGNLYAADVNETTGAVSVKTITYTDSSGAA 353

Query: 143 SNGKKFQVGHQNAEDVTVTVKTN-------NAGTLSVG------ALDVTTSGGRSTAMLK 189
           S+    ++G  + +   V +          N G L  G      AL    +G  +  +  
Sbjct: 354 SSPTAVKLGGDDGKTEVVDIDGKTYDSADLNGGNLQTGLTAGGEALTAVANGKTTDPLKA 413

Query: 190 IDAAIKSIDTQRASLGAIQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSTMTKNQV 249
           +D AI S+D  R+SLGA+QNRL   ++N  NT  N+++A+SRI D D+A E S M+K Q+
Sbjct: 414 LDDAIASVDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQI 473

Query: 250 LQQTGSAMLAQANQLPQIALSLL 272
           +QQ G+++LA+ANQ+PQ  LSLL
Sbjct: 474 IQQAGNSVLAKANQVPQQVLSLL 496