Pairwise Alignments

Query, 167 a.a., transcriptional activator rfaH, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 181 a.a., transcription antitermination protein NusG (NCBI) from Escherichia coli BW25113

 Score = 51.6 bits (122), Expect = 7e-12
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 17/175 (9%)

Query: 2   KAWYLIYCKPRNEMRA----QQNLSMQNLETYLPK----HRKQVKASGGAVSVSESVLFP 53
           K WY++      E R     ++++ + N+E    +      + V+  GG    SE   FP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 54  NYLFVQFDPEVTSVRSIHATRGVSRIVG----CSEQMTPIDDALIRALKRKELQVEKLAC 109
            Y+ VQ    V +  S H  R V R++G     S++  PI D  + A+  +  QV     
Sbjct: 67  GYVLVQM---VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123

Query: 110 EKPL-AAGERVKFCAGPFSDLEAIFLESDGNK-RCQVLFEFMGQQKQLDVESSSI 162
            K L   GE V+   GPF+D   +  E D  K R +V     G+   ++++ S +
Sbjct: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178